motifcluster
A Python package for motif-based spectral clustering of weighted directed networks.
Introduction
The motifcluster package provides implementations of motif-based spectral clustering of weighted directed networks in Python. These provide the capability for:
Building motif adjacency matrices
Sampling random weighted directed networks
Spectral embedding with motif adjacency matrices
Motif-based spectral clustering
The methods are all designed to run quickly on large sparse networks, and are easy to install and use. These methods are based on those described in [Underwood, Elliott and Cucuringu, 2020], which is available at arxiv:2004.01293.
Installation
From PyPI:
pip install motifclusterWith conda:
conda install -c conda-forge motifclusterDependencies
Networkx
Numpy
Scipy
Scikit-learn
Documentation
Documentation for the motifcluster package is available on Read the Docs.
Tutorial
A tutorial for the motifcluster package is available on Github in the tutorial directory.
Links
Source code repository on GitHub
Package index page on PyPI
Documentation on Read the Docs
1 maintainer
Metadata
1 maintainer
Release files for motifcluster 0.2.3
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| motifcluster-0.2.3.tar.gz | 131.1 kB | Without provenance | Details for motifcluster-0.2.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| motifcluster-0.2.3-py3-none-any.whl | Python 3 | none | any | Details for motifcluster-0.2.3-py3-none-any.whl |
Total release size: 159.2 kB
Release files / motifcluster-0.2.3.tar.gz
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| Size | 131.1 kB |
| Tags | Source |
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Release files / motifcluster-0.2.3-py3-none-any.whl
| Download URL | motifcluster-0.2.3-py3-none-any.whl |
|---|---|
| Size | 28.1 kB |
| Tags | Python 3 |
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twine/4.0.0 CPython/3.10.8
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Security for motifcluster 0.2.3
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