Skip to main content

A novel approach to motif identification in proteins

Project description

motif-finder

A novel approach to motif identification in proteins

Important

This code is in BETA and features may change without notice.

Usage

Provide a text query file, which is required. If not using manual motifs, also provide one more motif files using the -m flag to generate motifs dynamically.

pip install motiffinder
# main program
motiffinder <query file> -m <optional motif file>

# for help
motiffind -h

# for version
motiffinder -v

Or, clone this repository and set up with:

pip install -r requirements.text
python -m motiffinder <query file> -m <optional motif file>

# alternately, use setup.py to get the motiffinder package
python setup.py install

Contributors

Written by Carl Vitzthum and Prof. Andrea Tilden

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for motiffinder, version 0.0.2
Filename, size File type Python version Upload date Hashes
Filename, size motiffinder-0.0.2-py3-none-any.whl (25.0 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size motiffinder-0.0.2.tar.gz (21.5 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page