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A novel approach to motif identification in proteins

Project description


A novel approach to motif identification in proteins


This code is in BETA and features may change without notice.


Provide a text query file, which is required. If not using manual motifs, also provide one more motif files using the -m flag to generate motifs dynamically.

pip install motiffinder
# main program
motiffinder <query file> -m <optional motif file>

# for help
motiffind -h

# for version
motiffinder -v

Or, clone this repository and set up with:

pip install -r requirements.text
python -m motiffinder <query file> -m <optional motif file>

# alternately, use to get the motiffinder package
python install


Written by Carl Vitzthum and Prof. Andrea Tilden

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