Abstract
This application simply copies from embedded data a reference normal anonymized MRI of a subject aged 10 years, 06 months, 01 days.
Synopsis
mri10yr06mo01da_normal.python \
[-v <level>] [--verbosity <level>] \
[--version] \
[--man] \
[--meta] \
[--dir <dir>] \
[--splash <splash>] \
<outputDir>Arguments
[-v <level>] [--verbosity <level>]
Verbosity level for app. Not used currently.
[--version]
If specified, print version number.
[--man]
If specified, print this man page.
[--meta]
If specified, print plugin meta data.
[--splash <splash>]
An optional splash message to print on startup.
[--dir <dir>]
An optional override directory to copy to the <outputDir>.
Note, if run from a containerized version, this will copy
a directory from the *container* file system.Run
This plugin can be run in two modes: natively as a python package or as a containerized docker image.
Using PyPI
To run from PyPI, simply do a
pip install mri10yr06mo01da_normaland run with
mri10yr06mo01da_normal.py --man /tmpto get inline help. The app should also understand being called with only one positional argument
mri10yr06mo01da_normal.py /destination/directoryUsing docker run
To run using docker, be sure to assign an “input” directory to /incoming and an output directory to /outgoing. Make sure that the $(pwd)/out directory is world writable!
Now, prefix all calls with
docker run --rm -v $(pwd)/out:/outgoing \
fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py \Thus, getting inline help is:
mkdir out && chmod 777 out
docker run --rm -v $(pwd)/in:/incoming -v $(pwd)/out:/outgoing \
fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py \
--man \
/outgoingExamples
Copy the embedded MRI data to the out directory
mkdir out && chmod 777 out
docker run --rm -v $(pwd)/out:/outgoing \
fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py \
/outgoingCopy a user specified directory to the out directory
mkdir out && chmod 777 out
docker run --rm -v $(pwd)/out:/outgoing \
fnndsc/pl-mri10yr06mo01da_normal mri10yr06mo01da_normal.py \
--dir /usr/src/data
/outgoing1 maintainer
Metadata
1 maintainer
Release files for mri10yr06mo01da-normal 1.1.4
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| mri10yr06mo01da_normal-1.1.4.tar.gz | 4.5 kB | Without provenance | Details |
Release files / mri10yr06mo01da_normal-1.1.4.tar.gz
| Download URL | mri10yr06mo01da_normal-1.1.4.tar.gz |
|---|---|
| Size | 4.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
81fa1129f85ddd6092bfcf966d4b593b049be3f243cdd6321c94a2c5e9625eba
|
|
BLAKE2b-256 checksum How to use checksums |
db040b76bc485a04a04dd9e1b16fbc42d8f5e5223dc9bbb955f0cc1031c6e4cc
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/3.7.3
|
Security for mri10yr06mo01da-normal 1.1.4
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