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A series of modules that provide easy storage/accesss to Mass Spec related Raw Data/Groupings of Data.

Project description

ms-collect

A series of modules that provide easy storage/accesss to Mass Spec related Raw Data / Groupings of Data.

This package is currently in its BETA phase. Your understanding is greatly appreciated.

Installation

pip install ms-collect

Background

In regions of m/z and Retention Time, there exists various signals, features, and collections of data. This package provides:

  • Interfaces to entities that can represent these signals and collections.
  • Seamless visual utilities for these entities.
  • Input/Output utilities for parsing and organizing MS data.
  • Various conversion utilities for MS data.
MS-1 3D Plot MS-1 3D Spectrum
3D collection 3D Spectrum

3D collection as spectrum

Usage

For usage examples and Api documentation refer to: https://jakuzo.github.io/ms-collect/

Upcoming features

  • Visual utilities for the various types of collections.
  • Optimizations on resource intensive class methods.
  • Better import/export and IO related functionality.
  • Converting a collection to a dataframe.
  • Better Api doc experience.
  • If you would like to see something here we are accepting feature requests! Please submit an issue or ping us!

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