msea 0.0.2

Implementation of Microbe-Set Enrichment Analysis (MSEA).

msea: Microbe-Set Enrichment Analysis (MSEA) for functional interpretation of sets of microbial organisms

What is it?

msea a Python package implementing the Microbe-Set Enrichment Analysis pipeline, helping microbiologists make sense of collections microbes via external annotations.

Installation

# from PyPI
pip install msea

Dependencies

• NumPy
• SciPy
• pandas

Tutorials and Documentations

Please refer to examples or read the full documentation.

Development

For local development:

python setup.py develop

To run tests:

python setup.py test

To build documentation with Sphinx:

cd docs && make html

To build distribution:

python setup.py bdist bdist_wheel
# then upload to PyPI
python -m twine upload dist/*

License

BSD 3