multiscoresplot 1.0.0

Multi-dimensional gene set scoring and visualization for single-cell transcriptomics

multiscoresplot

Multi-dimensional gene set scoring and visualization for single-cell transcriptomics.

Color dimensionality reduction plots (UMAP, PCA, etc.) using a multi-dimensional color space derived from gene set scores.

Installation

pip install multiscoresplot

Quick Start

import multiscoresplot  # more to come!

Pipeline

1. Score -- Calculate gene set scores per cell
2. Color space -- Build a color space where each axis/vertex maps to a gene set
3. Project -- Map each cell into the color space based on its scores
4. Plot -- Color dimensionality reduction coordinates using the projected colors
5. Legend -- Render a simplex/ternary plot as the colorbar

Development

# Install in editable mode with all dev dependencies
pip install -e ".[dev,test,type]"

# Run tests
pytest

# Lint & format
ruff check src/ tests/
ruff format src/ tests/

# Type check
mypy src/

# Set up pre-commit hooks
pre-commit install

License

MIT