muni 0.1.20

Muni CLI — manage tools, jobs, spaces, and more

Muni CLI

Muni is the command-line interface for BioArena. Use it to discover available tools, submit jobs, monitor runs, download outputs, and work with spaces and canvas nodes from your terminal.

Install

pipx install muni

Or install into an existing environment:

pip install muni

Requires Python 3.11 or newer.

Log in

muni login

On a server or SSH session without a browser:

muni login --device

Check the active account:

muni whoami

Common Workflow

Find a tool:

muni tools
muni tools --category protein-design
muni tools -q rfd3

Inspect tool inputs:

muni tool bioarena_rfd3 --inputs
muni tool bioarena_rfd3 --examples

Submit a job:

muni run bioarena_rfd3 pdb_id=1UBQ num_designs=5

Submit and wait for completion:

muni run bioarena_rfd3 pdb_id=1UBQ num_designs=5 --follow

Submit parameters from JSON:

muni run bioarena_rfd3 --params-file params.json --follow

Run a batch from JSONL:

muni run bioarena_ipsae --batch jobs.jsonl --follow
cat jobs.jsonl | muni run bioarena_ipsae --batch - --follow

Check status and retrieve outputs:

muni status job_<uuid>
muni wait job_<uuid>
muni results job_<uuid>
muni results job_<uuid> --fields rank,sequence
muni files job_<uuid>
muni download-all job_<uuid> -o ./results/

Spaces and Canvas Nodes

List and choose a workspace:

muni spaces
muni space use "My Space"

List nodes on the active page:

muni nodes
muni nodes search "PXDesign"

Create or inspect nodes:

muni node create "Results" --type metric
muni node create "TREM2 rank 1" --type structure --file ./rank_1.cif
muni node read <node_id>
muni node run <node_id> --wait

Command Reference

Command	What it does
muni login	Authenticate the CLI
muni whoami	Show the current account
muni balance	Show credit balance
muni tools	List available tools
muni tool <name>	Show details for one tool
muni run <tool> KEY=VALUE	Submit a job
muni jobs	List recent jobs
muni status <job_id>	Check a job
muni wait <job_id>	Wait for one or more jobs
muni results <job_id>	Print job results
muni files <job_id>	List job output files
muni download <job_id> <path>	Download one output file
muni download-all <job_id>	Download all output files
muni spaces	List spaces
muni space <subcommand>	Manage a space
muni nodes	List canvas nodes
muni node <subcommand>	Create, read, edit, connect, or run nodes

Run muni --help or muni <command> --help for the full set of options.

License

MIT