muse2csv 1.0.0

Convert GE MUSE ECG XML exports to CSV format

muse2csv

Convert GE MUSE XML ECG exports to CSV format

muse2csv is a lightweight Python library that converts ECG data exported from the GE MUSE Resting ECG System (in XML format) into CSV (Comma Separated Values) format, compatible with Excel or similar tools and many programming languages.

Installation

Install directly from PyPI:

pip install muse2csv

Or install locally from source:

git clone https://github.com/nagyl1999/muse2csv.git
cd muse2csv
pip install .

Usage

An example is provided in the examples folder.

from muse2csv.converter import muse_to_csv
import pandas as pd
import matplotlib.pyplot as plt

muse_export = "examples/anonim_pac_xml_export.txt"
wfdb_filename = "patient001_ecg"

lead_names = ['I', 'II', 'III', 'aVR', 'aVL', 'aVF', 'V1', 'V2', 'V3', 'V4', 'V5', 'V6']

muse_to_csv(muse_export, wfdb_filename)

df = pd.read_csv(f'{wfdb_filename}.csv', sep=';')

df[lead_names].plot(subplots=True, figsize=(12, 8), sharex=True, legend=False)

annotations = df[df['QRS'] != '.']

plt.gcf().axes[0].scatter(
    annotations['Time'].index,
    annotations['I'].values,
    color='red',
    marker='*',
    zorder=5
)

plt.show()