mushin-py 0.9.0

Boilerplate-free, reproducible ML experiment workflows built on PyTorch Lightning and hydra-zen. Carved out of MIT-LL's responsible-ai-toolbox.

mushin

Boilerplate-free, reproducible machine-learning experiment sweeps
built on PyTorch Lightning and hydra-zen.

Documentation

Decorate an experiment, sweep over parameters, and get the results back as a labeled xarray.Dataset — not rows in a dashboard you have to export.

• Boilerplate-free — one decorator, no subclassing or callbacks; results come back as a labeled dataset you can slice and plot.
• Reproducible — every run captures its config + provenance, sweeps resume durably after a hard kill or cluster preemption, and auto-tuning pins a hardware-independent effective batch size.
• Scalable — the same task runs in-process, across cores, or on a multi-node SLURM cluster (validated on real GPU hardware); change only the launcher.
• Framework-agnostic — your task just returns a dict, so scikit-learn, XGBoost, or any Python model works, not only PyTorch.

Quickstart

import mushin

@mushin.sweep
def experiment(lr, seed):
    # ... train a model with this lr/seed, then evaluate it ...
    acc = ...                      # your validation accuracy
    return dict(accuracy=acc)      # whatever you return becomes a data variable

ds = experiment.run(
    lr=mushin.multirun([0.01, 0.1, 1.0]),
    seed=mushin.multirun([0, 1, 2]),
)  # 9 runs, returned as a labeled xarray.Dataset
# <xarray.Dataset> Dimensions: (lr: 3, seed: 3)
#   Data variables: accuracy (lr, seed)

ds["accuracy"].mean("seed")        # average over seeds, per learning rate

# Prefer pandas? One call gives a tidy table — no xarray required:
experiment.workflow.to_dataframe() #    lr  seed  accuracy
                                   # 0  0.01    0      ...

The decorator version above runs as examples/parallel_sweep.py; examples/sweep_to_dataset.py is the same flow written with the class API. Need the full tool (.failures, provenance, custom analysis)? Drop to experiment.workflow, or subclass MultiRunMetricsWorkflow.

What else it does

Each links to a guide with a runnable example:

• Compare methods with statistics — benchmark.compare runs a metric battery (torchmetrics) across seeds and returns a labeled dataset plus significance (scipy); Study runs the training sweep and feeds it straight in.
• Compare LLM systems — the same significance spine for LLM evals, with Holm-corrected p-values and an optional output cache.
• Built-in batteries — classification, segmentation, detection, regression, retrieval, image-quality, audio.
• Resilient & resumable sweeps — on_error="nan", durable resume=True across hard kills/preemption, and per-run provenance.
• Parallel & out-of-process launchers — run(..., launcher="joblib") or submitit; stdlib-picklable dispatch.
• Multi-node & sharded training — HydraDDP / HydraFSDP and pin_gpu_round_robin GPU packing, validated on a real SLURM cluster.
• Auto-tuning — tune_batch_size / tune_learning_rate, pinned for reproducibility.
• Analyze from Claude Code (MCP) — an optional read-only MCP server to load and inspect completed runs.

Installation

pip install mushin-py           # the sweep -> dataset core
pip install "mushin-py[eval]"   # + compare, metric batteries, LLM eval, Study

The PyPI distribution is mushin-py, but you import mushin (like scikit-learn → sklearn). The eval extra adds the evaluation layer (compare, the metric batteries, LLM evaluation, Study) and its heavier dependencies (torchmetrics, scipy) — keeping the core install lean; accessing those features without it raises a clear install hint. Other optional extras: viz, netcdf, detection, image, audio, mcp (the battery extras imply eval) — e.g. pip install "mushin-py[eval,viz]". Supported Python: 3.10 – 3.14.

Versioning & scope

mushin follows SemVer with pre-1.0 semantics: a minor bump (0.8 → 0.9) may contain breaking changes, always listed with migration notes in the changelog; patch releases never break. The public API is the top-level mushin namespace plus the documented mushin.benchmark / mushin.llm symbols — underscore modules are internal. The project's scope is deliberately narrow: boilerplate-free, reproducible sweep → dataset, with an optional evaluation layer behind the eval extra. It complements — and does not replace — experiment trackers like W&B or TensorBoard (see the workflows guide for using both together).

Citation

If you use mushin in your research, please cite it (the concept DOI always resolves to the latest release):

@software{martinez_mushin,
  author  = {Martínez-Martínez, Josué},
  title   = {mushin: boilerplate-free, reproducible machine-learning experiment sweeps},
  year    = {2026},
  version = {0.9.0},
  doi     = {10.5281/zenodo.21436444},
  url     = {https://github.com/martinez-hub/mushin}
}

GitHub's "Cite this repository" button (from CITATION.cff) generates this for you.

Contributing

Issues and pull requests are welcome. Local development uses uv:

uv sync
uv run pytest tests/ --hypothesis-profile fast   # tests (DDP test needs >=2 GPUs)
uv run ruff check . && uv run ruff format --check .

Or make check (lint + format + spell + tests, as CI runs). See CONTRIBUTING.md.

Disclaimer

mushin is a maintained, standalone carve-out of the rai_toolbox.mushin subpackage from MIT Lincoln Laboratory's responsible-ai-toolbox (no longer maintained). This is a fork/extraction, not a replacement endorsed by MIT-LL; the original MIT copyright is retained (see LICENSE.txt). The configuration engine it builds on, hydra-zen, is actively maintained by the same group.