MxlBricks is a Python package to quickly build large mechanistic models
Project description
MxlBricks
MxlBricks is a Python package to build mechanistic models composed of pre-defined reactions (bricks). This facilitates re-use and interoperability between different models by sharing common parts.
Installation
You can install mxlpy using pip: pip install mxlmodels.
Done. Simple as that.
Models
| Name | Description |
|---|---|
| Ebenhöh 2011 | PSII & two-state quencher & ATP synthase |
| Ebenhöh 2014 | PETC & state transitions & ATP synthase from Ebenhoeh 2011 |
| Matuszyńska 2016 NPQ | 2011 + PSII & four-state quencher |
| Matuszyńska 2016 PhD | ? |
| Matuszyńska 2019 | Merges PETC (Ebenhöh 2014), NPQ (Matuszynska 2016) and CBB (Poolman 2000) |
| Saadat 2021 | 2019 + Mehler (Valero ?) & Thioredoxin & extendend PSI states & consumption |
| van Aalst 2023 | Saadat 2021 & Yokota 1985 & Witzel 2010 |
References
| Name | Description |
|---|---|
| Poolman 2000 | CBB cycle, based on Pettersson & Ryde-Pettersson 1988 |
| Yokota 1985 | Photorespiration |
| Valero ? |
Tool family 🏠
MxlBricks is part of a larger family of tools that are designed with a similar set of abstractions. Check them out!
- MxlPy is a Python package for mechanistic learning (Mxl)
- MxlModels supplies flat, single-file versions of MxlBricks models for easy inspection
- MxlWeb brings simulation of mechanistic models to the browser!
- pysbml simplifies SBML models for import/export with MxlPy
- Parameteriser looks up kinetic parameters from BRENDA and other databases
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file mxlbricks-1.0.0.tar.gz.
File metadata
- Download URL: mxlbricks-1.0.0.tar.gz
- Upload date:
- Size: 697.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6666b0d1344837f436b4031f8d6ea77bdb6922cd1def32e5e3f60785211226fe
|
|
| MD5 |
b0faffc827ee12e2415250c9ae50a880
|
|
| BLAKE2b-256 |
2b8a6224a280637d1113f4c8d14f2845679a2427e730f36813b42538b2d99285
|
Provenance
The following attestation bundles were made for mxlbricks-1.0.0.tar.gz:
Publisher:
python-publish.yml on Computational-Biology-Aachen/mxl-bricks
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
mxlbricks-1.0.0.tar.gz -
Subject digest:
6666b0d1344837f436b4031f8d6ea77bdb6922cd1def32e5e3f60785211226fe - Sigstore transparency entry: 1399400649
- Sigstore integration time:
-
Permalink:
Computational-Biology-Aachen/mxl-bricks@9b11d4987df898caf068267ae8f871406a303069 -
Branch / Tag:
refs/tags/v1.0.0 - Owner: https://github.com/Computational-Biology-Aachen
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
python-publish.yml@9b11d4987df898caf068267ae8f871406a303069 -
Trigger Event:
release
-
Statement type:
File details
Details for the file mxlbricks-1.0.0-py3-none-any.whl.
File metadata
- Download URL: mxlbricks-1.0.0-py3-none-any.whl
- Upload date:
- Size: 129.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.13.12
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
ce139dacb828e60d8fe3e79e1ca0d816e41be1e653741435bf642c2965c54b27
|
|
| MD5 |
c335a89c6c267135ef9a667886766fb8
|
|
| BLAKE2b-256 |
31ce2702ee6c82d1868c0ad0b83bc4ae7c74fd79bf1ac0154a230b855d974f26
|
Provenance
The following attestation bundles were made for mxlbricks-1.0.0-py3-none-any.whl:
Publisher:
python-publish.yml on Computational-Biology-Aachen/mxl-bricks
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
mxlbricks-1.0.0-py3-none-any.whl -
Subject digest:
ce139dacb828e60d8fe3e79e1ca0d816e41be1e653741435bf642c2965c54b27 - Sigstore transparency entry: 1399400654
- Sigstore integration time:
-
Permalink:
Computational-Biology-Aachen/mxl-bricks@9b11d4987df898caf068267ae8f871406a303069 -
Branch / Tag:
refs/tags/v1.0.0 - Owner: https://github.com/Computational-Biology-Aachen
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
python-publish.yml@9b11d4987df898caf068267ae8f871406a303069 -
Trigger Event:
release
-
Statement type:
