MxlPy
MxlPy (pronounced "em axe el pie") is a Python package for mechanistic learning (Mxl) - the combination of mechanistic modeling and machine learning to deliver explainable, data-informed solutions.
Documentation
You can find extensive documentation directly here on github
Installation
You can install mxlpy using pip: pip install mxlpy.
Due to their sizes, the machine learning packages are optional dependencies. You can install them using
# One of them respectively
pip install mxlpy[torch]
pip install mxlpy[tensorflow]
pip install mxlpy[keras]
pip install mxlpy[jax]
pip install mxlpy[sr]
# together
pip install mxlpy[torch, tensorflow, keras, jax, sr]
If you want access to the sundials solver suite via the assimulo package, we recommend setting up a virtual environment via pixi or mamba / conda using the conda-forge channel.
pixi init
pixi add python assimulo
pixi add --pypi mxlpy
How to cite
If you use this software in your scientific work, please cite this article:
Development setup
You have two choices here, using uv (pypi-only) or using pixi (conda-forge, including assimulo)
uv
- Install
uvas described in the docs. - Run
uv sync --all-extras --all-groupsto install dependencies locally
pixi
- Install
pixias described in the docs - Run
pixi install --frozen
LLMs
We support the llms.txt convention for making documentation available to large language models and the applications that make use of them. It is located at docs/llms.txt
Tool family 🏠
MxlPy is part of a larger family of tools that are designed with a similar set of abstractions. Check them out!
- MxlBricks is built on top of
MxlPyto build mechanistic models composed of pre-defined reactions (bricks) - MxlModels supplies flat, single-file versions of MxlBricks models for easy inspection
- MxlWeb brings simulation of mechanistic models to the browser!
- pysbml simplifies SBML models for import/export with MxlPy
- Parameteriser looks up kinetic parameters from BRENDA and other databases
2 maintainers
Metadata
2 maintainers
Release files for mxlpy 0.59.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| mxlpy-0.59.0.tar.gz | 5.5 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| mxlpy-0.59.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 5.8 MB
Release files / mxlpy-0.59.0.tar.gz
| Download URL | mxlpy-0.59.0.tar.gz |
|---|---|
| Size | 5.5 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Transparency logRelease files / mxlpy-0.59.0-py3-none-any.whl
| Download URL | mxlpy-0.59.0-py3-none-any.whl |
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| Size | 313.0 kB |
| Tags | Python 3 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
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PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 5, 2026.
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