My Genome Viewer: myGV
myGV the little genome browser that could.
What is myGV?
myGV is an experimental genome browser in the style of IGV. I am building it with AI agents, starting with features I have always wanted. For example it has WASD control to zoom and pan, and full control over glyphs. I am still figuring out the rest, and that is the fun of it.
Installation
We assume you have the pixi package manager installed. If not, you should.
# Add tpython and pyside6 to your pixi environment
pixi add python pyside6
Now you can install myGV with:
# Install myGV in your pixi environment
pip install mygv
Run
Run mygv to see what it can do.
mygv
To run the browser with default settings, run:
mygv browse
Pass your genome fasta and gff files to the browser.
mygv browse \
--fasta genome_sequence.fa \
--gff genome_annotations.gff
Enjoy!
Metadata
Release files for mygv 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| mygv-0.1.0.tar.gz | 1.1 MB | Without provenance | Details for mygv-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| mygv-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for mygv-0.1.0-py3-none-any.whl |
Total release size: 2.2 MB
Release files / mygv-0.1.0.tar.gz
| Download URL | mygv-0.1.0.tar.gz |
|---|---|
| Size | 1.1 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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uv/0.13.6 {"installer":{"name":"uv","version":"0.13.6","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"macOS","version":null,"id":null,"libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":null}
|
Release files / mygv-0.1.0-py3-none-any.whl
| Download URL | mygv-0.1.0-py3-none-any.whl |
|---|---|
| Size | 1.1 MB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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uv/0.13.6 {"installer":{"name":"uv","version":"0.13.6","subcommand":["publish"]},"python":null,"implementation":{"name":null,"version":null},"distro":{"name":"macOS","version":null,"id":null,"libc":null},"system":{"name":null,"release":null},"cpu":null,"openssl_version":null,"setuptools_version":null,"rustc_version":null,"ci":null}
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Security for mygv 0.1.0
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