myimg 0.5.2

Toolbox for processing of microscopic images.

MyImg :: Processing of micrographs

• MyImg is a toolbox for the processing of micrographs, which can:
  1. Process single micrographs (improve contrast, insert scalebars, etc.).
  2. Prepare publication-quality tiled images from the processed micrographs.
  3. Run additional applications such as: Fourier transforms, particle size distributions ...

Principle

• TODO

Installation

• Requirement: Python with sci-modules: numpy, matplotlib, pandas
• pip install scikit-image = additional package for image processing
• pip install hyperspy[all] = package that can read Velox EMD files
• pip install exspy[all] = supplement to hyperspy package
• pip install tabulate = tabulate module for nice outputs
• pip install myimg = MyImg package itself (uses all packages above)

Quick start

• Worked example shows a simple use of MyImg package.
• Help on GitHub with complete package documentation and additional examples.

Documentation, help and examples

• PyPI repository - the stable version to install.
• GitHub repository - the current version under development.
• GitHub Pages - the more user-friendly version of GitHub website.

Versions of MyImg

• Version 0.1 = 1st draft: too complex, later completely re-written
• Version 0.2 = 2nd draft: MyImage object with cut, crop, label, scalebar
• Version 0.3 = objects: MyImage, MyReport; apps: FFT, iLabels (semi-finished)
• Version 0.4 = apps.velox: utilities to process Velox EMD files
• Version 0.5 = better Apps interface + improved Apps + updated documentation
• Version 0.6 = TODO: add scalebar-stripes, mdistr + finalize FFT, iLabels