namingpaper 0.2.7

CLI tool to rename academic papers using AI-extracted metadata

namingpaper

A CLI tool that renames academic PDF papers using AI-extracted metadata.

Before: 1-s2.0-S0304405X13000044-main.pdf

After: Fama and French, (1993, JFE), Common risk factors in the returns....pdf

Features

• Extracts metadata (authors, year, journal, title) from PDFs using AI
• Supports multiple AI providers: Claude, OpenAI, Gemini, and Ollama (local)
• Batch processing - rename entire directories at once
• Custom templates - flexible filename formatting
• Dry-run mode by default for safety
• Copy to output directory (keeps original file)
• Handles filename collisions (skip, increment, or overwrite)
• Common journal abbreviations (JFE, AER, QJE, etc.)

Installation

# Using uv (recommended)
uv tool install namingpaper

# Using pipx
pipx install namingpaper

# With optional providers
uv tool install "namingpaper[openai]"    # OpenAI support
uv tool install "namingpaper[gemini]"    # Gemini support
# or with pipx
pipx install "namingpaper[openai]"
pipx install "namingpaper[gemini]"

# Update to latest version
uv tool upgrade namingpaper
# or
pipx upgrade namingpaper

# Uninstall
uv tool uninstall namingpaper
# or
pipx uninstall namingpaper

# Or install from source
git clone https://github.com/DanTsai0903/namingpaper.git
cd namingpaper
uv sync

Quick Start

The default provider is Ollama (local, no API key needed). Install it from ollama.com, then pull the required model:

ollama pull qwen3:8b

# Preview the rename (dry run)
namingpaper rename paper.pdf

# Actually rename the file
namingpaper rename paper.pdf --execute

# Batch rename all PDFs in a directory
namingpaper batch ~/Downloads/papers --execute

Using Cloud Providers

If you want to use Claude, OpenAI, or Gemini instead of local Ollama:

# Option 1: Set environment variable (temporary, current session only)
export NAMINGPAPER_ANTHROPIC_API_KEY=sk-ant-api03-xxxxx
namingpaper rename paper.pdf -p claude

# Option 2: Add to shell profile (permanent)
# For zsh (macOS default):
echo 'export NAMINGPAPER_ANTHROPIC_API_KEY=sk-ant-api03-xxxxx' >> ~/.zshrc
source ~/.zshrc

# For bash:
echo 'export NAMINGPAPER_ANTHROPIC_API_KEY=sk-ant-api03-xxxxx' >> ~/.bashrc
source ~/.bashrc

# Option 3: Use config file (~/.namingpaper/config.toml)
mkdir -p ~/.namingpaper
cat > ~/.namingpaper/config.toml << EOF
ai_provider = "claude"
anthropic_api_key = "sk-ant-api03-xxxxx"
EOF

Usage

Rename Command

Rename a single PDF file.

namingpaper rename <pdf_path> [OPTIONS]

Options:
  -x, --execute              Actually rename (default is dry-run)
  -y, --yes                  Skip confirmation prompt
  -p, --provider TEXT        AI provider (claude, openai, gemini, ollama)
  -m, --model TEXT           Override the default model for the provider
  --ocr-model TEXT           Override Ollama OCR model (default: deepseek-ocr)
  -t, --template TEXT        Filename template or preset name
  -o, --output-dir DIR       Copy to directory (keeps original)
  -c, --collision STRATEGY   Handle collisions: skip, increment, overwrite

Batch Command

Rename multiple PDF files in a directory.

namingpaper batch <directory> [OPTIONS]

Options:
  -x, --execute              Actually rename (default is dry-run)
  -y, --yes                  Skip confirmation prompt
  -r, --recursive            Scan subdirectories
  -f, --filter PATTERN       Only process files matching pattern (e.g., '2023*')
  -p, --provider TEXT        AI provider (claude, openai, gemini, ollama)
  -m, --model TEXT           Override the default model for the provider
  --ocr-model TEXT           Override Ollama OCR model (default: deepseek-ocr)
  -t, --template TEXT        Filename template or preset name
  -o, --output-dir DIR       Copy to directory (keeps originals)
  -c, --collision STRATEGY   Handle collisions: skip, increment, overwrite
  --parallel N               Concurrent extractions (default: 1)
  --json                     Output results as JSON

Templates Command

Show available filename templates.

namingpaper templates

Version Command

Show the installed namingpaper version.

namingpaper version
namingpaper -v

Update Command

Show or run the update command for your environment.

# Preview detected update command
namingpaper update

# Run update automatically
namingpaper update --execute --yes

Uninstall Command

Show or run the uninstall command for your environment.

# Preview detected uninstall command
namingpaper uninstall

# Run uninstall automatically
namingpaper uninstall --execute --yes

# True cleanup (also removes ~/.namingpaper config/data)
namingpaper uninstall --execute --yes --purge

Notes:

• --purge removes ~/.namingpaper (for example ~/.namingpaper/config.toml).
• Uninstall does not remove external provider assets such as Ollama models.

Examples

Single File

# Dry run with Ollama (default)
namingpaper rename paper.pdf

# Execute rename
namingpaper rename paper.pdf --execute

# Use a template
namingpaper rename paper.pdf -t compact --execute

# Copy to a different folder (keeps original)
namingpaper rename paper.pdf -o ~/Papers --execute

# Use Claude
namingpaper rename paper.pdf -p claude --execute

# Use OpenAI
namingpaper rename paper.pdf -p openai --execute

# Auto-increment on collision
namingpaper rename paper.pdf -c increment --execute

# Skip confirmation
namingpaper rename paper.pdf -xy

Batch Processing

# Preview all renames in a directory
namingpaper batch ~/Downloads/papers

# Execute batch rename
namingpaper batch ~/Downloads/papers --execute

# Recursive scan with subdirectories
namingpaper batch ~/Downloads/papers -r --execute

# Filter by pattern (only 2023 papers)
namingpaper batch ~/Downloads/papers -f "2023*" --execute

# Use compact template
namingpaper batch ~/Downloads/papers -t compact --execute

# Custom template
namingpaper batch ~/Downloads/papers -t "{year} - {authors} - {title}" --execute

# Copy to organized folder
namingpaper batch ~/Downloads -o ~/Papers/Organized --execute

# Parallel processing (faster)
namingpaper batch ~/Downloads/papers --parallel 4 --execute

# Output as JSON (for scripting)
namingpaper batch ~/Downloads/papers --json

View Configuration

namingpaper config --show

Filename Templates

Templates control how the output filename is formatted.

Preset Templates

Name	Pattern	Example
default	{authors}, ({year}, {journal}), {title}	Fama and French, (1993, JFE), Common risk....pdf
compact	{authors} ({year}) {title}	Fama and French (1993) Common risk....pdf
full	{authors}, ({year}, {journal_full}), {title}	Fama and French, (1993, Journal of Financial Economics), Common....pdf
simple	{authors} - {year} - {title}	Fama and French - 1993 - Common risk....pdf

Template Placeholders

Placeholder	Description	Example
{authors}	Author surnames (comma-separated, "et al" if >3)	Fama and French
{authors_full}	Author full names	Eugene F. Fama and Kenneth R. French
{authors_abbrev}	Surname with initials	Fama, E. F. and French, K. R.
{year}	Publication year	1993
{journal}	Journal abbreviation (or full name if no abbrev)	JFE
{journal_abbrev}	Journal abbreviation only	JFE
{journal_full}	Full journal name	Journal of Financial Economics
{title}	Paper title (truncated)	Common risk factors in the returns...

Custom Templates

# Year-first format
namingpaper rename paper.pdf -t "{year} - {authors} - {title}"

# Minimal format
namingpaper batch ~/papers -t "{authors} {year}"

# Full journal name
namingpaper batch ~/papers -t "{authors}, ({year}, {journal_full}), {title}"

Configuration

Environment Variables

Variable	Description
NAMINGPAPER_ANTHROPIC_API_KEY	Anthropic API key (for Claude)
NAMINGPAPER_OPENAI_API_KEY	OpenAI API key
NAMINGPAPER_GEMINI_API_KEY	Google Gemini API key
NAMINGPAPER_AI_PROVIDER	Provider: ollama (default), claude, openai, gemini
NAMINGPAPER_MODEL_NAME	Override default text model for provider
NAMINGPAPER_OLLAMA_OCR_MODEL	Override Ollama OCR model (default: deepseek-ocr)
NAMINGPAPER_OLLAMA_BASE_URL	Ollama API URL (default: http://localhost:11434)
NAMINGPAPER_MAX_AUTHORS	Max authors before "et al" (default: 3)
NAMINGPAPER_MAX_FILENAME_LENGTH	Max filename length (default: 200)

Config File

Create ~/.namingpaper/config.toml:

# Default provider (ollama requires no API key)
ai_provider = "ollama"
ollama_base_url = "http://localhost:11434"
# ollama_ocr_model = "deepseek-ocr"    # Override OCR model
# model_name = "qwen3:8b"              # Override text model

# Or use cloud providers
# ai_provider = "claude"
# anthropic_api_key = "sk-ant-..."

# Formatting options
max_authors = 3
max_filename_length = 200

AI Providers

Ollama (Default)

Local LLM, no API key needed. Just have Ollama running. Text is extracted from PDFs using PyMuPDF; the OCR model is only used as a fallback for scanned/image-only PDFs.

# Pull the required model
ollama pull qwen3:8b           # Text model (parses metadata)

# Optional: OCR fallback for scanned PDFs
ollama pull deepseek-ocr

# Use it (default provider)
namingpaper rename paper.pdf

# Use a different text model
namingpaper rename paper.pdf -m gemma2:9b

# Use a different OCR model (for scanned PDFs)
namingpaper rename paper.pdf --ocr-model llava

Claude

export NAMINGPAPER_ANTHROPIC_API_KEY=sk-ant-...
namingpaper rename paper.pdf -p claude

# Use a specific Claude model
namingpaper rename paper.pdf -p claude -m claude-haiku-4-20250514

OpenAI

uv add "namingpaper[openai]"
export NAMINGPAPER_OPENAI_API_KEY=sk-...
namingpaper rename paper.pdf -p openai

# Use a specific OpenAI model
namingpaper rename paper.pdf -p openai -m gpt-4o-mini

Gemini

uv add "namingpaper[gemini]"
export NAMINGPAPER_GEMINI_API_KEY=...
namingpaper rename paper.pdf -p gemini

# Use a specific Gemini model
namingpaper rename paper.pdf -p gemini -m gemini-2.0-flash

Troubleshooting

Ollama connection errors

Cannot connect to Ollama at http://localhost:11434

Make sure Ollama is running:

ollama serve

Model not found

Model 'qwen3:8b' not found in Ollama

Pull the required model:

ollama pull qwen3:8b

Low confidence / skipped files

If files are skipped with "low confidence", the AI wasn't confident the file is an academic paper. You can lower the threshold:

export NAMINGPAPER_MIN_CONFIDENCE=0.3

Timeout errors

For slow machines or large models, Ollama may time out. Try a smaller model:

namingpaper rename paper.pdf -m qwen3:4b

Development

# Clone and setup
git clone https://github.com/DanTsai0903/namingpaper.git
cd namingpaper
uv sync --extra dev

# Run tests
uv run pytest -v

# Run a specific test
uv run pytest tests/test_formatter.py -v

Contributing

1. Fork the repository
2. Create a feature branch (git checkout -b feature/my-feature)
3. Make your changes and add tests
4. Run uv run pytest to verify tests pass
5. Commit and push to your fork
6. Open a pull request

License

MIT