Install all Oxford Nanopore scrips and modules for processing and analysis
Easily install all my long read processing and analysis scripts simultaneously.
pip install nanopack ## Updating pip install nanopack --upgrade
These scripts are written and tested for Python3, and may not work on Python2.
NanoPlot: creating many relevant plots derived from reads (fastq), alignments (bam) and albacore summary files. Examples can be found in the gallery on my blog. NanoPack is also available with a graphical user interface in NanoGUI or as a web service.
NanoComp: comparing multiple runs on read length and quality based on reads (fastq), alignments (bam) or albacore summary files.
NanoQC: Generating plots to investigate nucleotide composition and quality distribution at the end of reads.
NanoStat: Quickly create a statistical summary from reads, an alignment or a summary file.
NanoFilt: Streaming script for filtering a fastq file based on a minimum length, minimum quality cut-off, minimum and maximum average GC. Also trimming nucleotides from either read ends is an option.
nanoget: Functions for extracting features from reads, alignments and albacore summary data, parallelized.
nanomath: Functions for mathematical processing and calculating statistics.
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