nanopq 0.2.2

Pure python implementation of product quantization for nearest neighbor search

nanopq

Nano Product Quantization (nanopq): a vanilla implementation of Product Quantization (PQ) and Optimized Product Quantization (OPQ) written in pure python without any third party dependencies.

Installing

You can install the package via pip. This library works with Python 3.5+ on linux.

pip install nanopq

Documentation

• Tutorial
• API

Example

import nanopq
import numpy as np

N, Nt, D = 10000, 2000, 128
X = np.random.random((N, D)).astype(np.float32)  # 10,000 128-dim vectors to be indexed
Xt = np.random.random((Nt, D)).astype(np.float32)  # 2,000 128-dim vectors for training
query = np.random.random((D,)).astype(np.float32)  # a 128-dim query vector

# Instantiate with M=8 sub-spaces
pq = nanopq.PQ(M=8)

# Train codewords
pq.fit(Xt)

# Encode to PQ-codes
X_code = pq.encode(X)  # (10000, 8) with dtype=np.uint8

# Results: create a distance table online, and compute Asymmetric Distance to each PQ-code 
dists = pq.dtable(query).adist(X_code)  # (10000, ) 

Author

• Yusuke Matsui

Contributors

• @Hiroshiba fixed a bug of importlib (#3)
• @calvinmccarter implemented parametric initialization for OPQ (#14)
• @de9uch1 exntended the interface to the faiss so that OPQ can be handled (#19)
• @mpskex implemented (1) initialization of clustering and (2) dot-product for computation (#24)
• @lsb fixed a typo (#26)
• @asukaminato0721 used Literal for string inputs (#42)

Reference

• H. Jegou, M. Douze, and C. Schmid, "Product Quantization for Nearest Neighbor Search", IEEE TPAMI 2011 (the original paper of PQ)
• T. Ge, K. He, Q. Ke, and J. Sun, "Optimized Product Quantization", IEEE TPAMI 2014 (the original paper of OPQ)
• Y. Matsui, Y. Uchida, H. Jegou, and S. Satoh, "A Survey of Product Quantization", ITE MTA 2018 (a survey paper of PQ)
• PQ in faiss (Faiss contains an optimized implementation of PQ. See the difference to ours here)
• Rayuela.jl (Julia implementation of several encoding algorithms including PQ and OPQ)
• PQk-means (clustering on PQ-codes. The implementation of nanopq is compatible to that of PQk-means)
• Rii (IVFPQ-based ANN algorithm using nanopq)
• Product quantization in Faiss and from scratch (Related tutorial)