nanoQC
Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC. All contributions are welcome.
INSTALLATION
pip install nanoQC
or
conda install -c bioconda nanoqc
USAGE
nanoQC [-h] [-v] [-o OUTDIR] fastq
positional arguments:
fastq Reads data in fastq.gz format.
optional arguments:
-h, --help show this help message and exit
-v, --version Print version and exit.
-o, --outdir OUTDIR Specify directory in which output has to be created.
-l, --minlen int Minimum length of reads to be included in the plots
This also controls the length plotted in the graphs
from the beginning and end of reads (length plotted = minlen / 2)
CITATION
If you use this tool, please consider citing our publication.
CONTRIBUTIONS
Thanks to:
- Jasper Ouwerkerk (JasperO98) for improving how reads are selected (v0.8.0)
1 maintainer
Metadata
1 maintainer
Release files for nanoQC 0.10.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| nanoQC-0.10.0.tar.gz | 17.9 kB | Details |
Release files / nanoQC-0.10.0.tar.gz
| Download URL | nanoQC-0.10.0.tar.gz |
|---|---|
| Size | 17.9 kB |
| Tags | Source |
|
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twine/4.0.1 CPython/3.8.10
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