napari-lattice
This napari plugin allows deskewing, cropping, visualisation and designing custom analysis pipelines for lattice lightsheet data, particularly from the Zeiss Lattice Lightsheet. Support will eventually be for other types of data.
Documentation
Check the Wiki page for documentation on how to get started.
Features
Functions:
- Deskewing and deconvolution of Zeiss lattice lightsheet images
- Ability to preview deskewed image at channel or timepoint of interest
- Crop and deskew only a small portion of the image
- You can import ROIs created in ImageJ into the plugin for cropping
- Create image processing workflows using napari-workflows and apply them to lattice lightsheet data
- Run deskewing, deconvolution and custom image processing workflows from the terminal
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
======= Distributed under the terms of the [GPL-3.0 License] license, "napari_lattice" is free and open source software
Acknowledgment
This project was supported by funding from the Rogers Lab at the Centre for Dynamic Imaging at the Walter and Eliza Hall Institute of Medical Research. This project has been made possible in part by Napari plugin accelerator grant from the Chan Zuckerberg Initiative DAF, an advised fund of the Silicon Valley Community Foundation.
Thanks to the developers and maintainers of the amazing open-source plugins such as pyclesperanto, aicsimageio, dask and pycudadecon. ALso, thanks to the imagesc forum!
Issues
If you encounter any problems, please [file an issue] along with a detailed description.
Release files for napari-lattice 0.1.9
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| napari-lattice-0.1.9.tar.gz | 55.1 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| napari_lattice-0.1.9-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 112.3 kB
Release files / napari-lattice-0.1.9.tar.gz
| Download URL | napari-lattice-0.1.9.tar.gz |
|---|---|
| Size | 55.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
6fc83b708971a49020ed821bf9a78ff3987b050982c194e041987e34e431c6d8
|
|
BLAKE2b-256 checksum How to use checksums |
04b49619cd902cf690af41e72c85a70af007f4345b70f7d2d8c6499e9643a897
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.13
|
Release files / napari_lattice-0.1.9-py3-none-any.whl
| Download URL | napari_lattice-0.1.9-py3-none-any.whl |
|---|---|
| Size | 57.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
7b33d07474e662fd886c86a41aa50ce2c237e92fc092ae7e0fed1a1bd78d6a1a
|
|
BLAKE2b-256 checksum How to use checksums |
bec9853f283eebf3e1237602e60bbd53ab0b685f325cab1f54f2e38c17d565da
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.9.13
|
