napari-sketchpose 0.0.8

A plugin to adapt Omnipose implementation to frugal labelling.

napari-sketchpose

A plugin to adapt the Omnipose implementation to frugal labeling. It aims to facilitate the use of transfer learning with little data, by not needing to draw entire cells, but a few squiggles instead (see GIF below).

Image Credit: Eduard Muzhevskyi

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

First, we advise you to create a conda environment in Python 3.10, in which you will run Napari:

conda create -n sketchpose_env python=3.10
conda activate sketchpose_env
conda install pip
python -m pip install "napari[all]" --upgrade

You can install napari_sketchpose via pip:

pip install napari_sketchpose

Tutorial

We strongly recommend reading the documentation to get the most out of the plugin. A step-by-step tutorial illustrated with GIFs will guide you through the various stages.

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the GNU GPL v3.0 license, "napari-sketchpose" is free and open source software

Issues

If you encounter any problems, please [file an issue] along with a detailed description.