napari-vemseg
A simple plugin to do semi-automated segmentation within napari using vemseg built on XGBoost.
Installation
conda Installation and Environment Creation
To start with a conda environment must be created.
conda create -n vemseg-env python=3.8
conda activate vemseg-env
napari Instillation
We must then install napari:
pip install "napari[all]"
napari-vemseg Instillation
You can finally install napari-vemseg via pip:
conda install pyopencl
pip install napari-vemseg
Usage
Train VEMClassifier
Predict Using Pretrained VEMClassifier
Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "napari-vemseg" is free and open source software
Issues
If you encounter any problems, please [file an issue] along with a detailed description.
1 maintainer
Metadata
1 maintainer
Release files for napari-vemseg 0.0.9
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| napari-vemseg-0.0.9.tar.gz | 33.2 kB | Without provenance | Details for napari-vemseg-0.0.9.tar.gz |
Release files / napari-vemseg-0.0.9.tar.gz
| Download URL | napari-vemseg-0.0.9.tar.gz |
|---|---|
| Size | 33.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
a5eef69f267fb515c8fdd05766a8ce6fdc5a0384b54aeac3f988785964adb8c9
|
|
BLAKE2b-256 checksum How to use checksums |
290d9913f2c81d340d300587bd8336f87f106a1816b3155fd6888141a3f3acea
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.8.15
|
Security for napari-vemseg 0.0.9
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
