convert notebook to workflow

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  • License: GPLv3
  • Author: Volodymyr Savchenko
  • Tags jupyter , docker
  • Requires: Python >=3.9
  • Provides-Extra: service , consul , owlready , cwl , docker , domains , k8s , galaxy , mmoda
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Project description

PyPI version codebeat badge Python package codecov

This repository helps to use notebook as a workflow.

Starts service without container:

nb2service tests/testrepo/workflow-notebook.ipynb

Builds service container and starts it:

nb2worker tests/testrepo/

Builds one-shot container and cwl:

nb2worker tests/testrepo/ --build --job

Generates cwl:

nb2cwl tests/testrepo/

Deploys a service

Building and deploying RESTful (Swagger) service:

$ nb2deploy https://renkulab.io/gitlab/vladimir.savchenko/oda-sdss legacysurvey

Alternatively, using kaniko:

$ nb2deploy https://renkulab.io/gitlab/astronomy/mmoda/fermi fermi-an-test --build-engine kaniko

Motivation

See development guide for details https://odahub.io/docs/guide-development/

Why run notebooks?

Why convert notebook as a service?

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for volodymyrss from gravatar.com volodymyrss

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: GPLv3
  • Author: Volodymyr Savchenko
  • Tags jupyter , docker
  • Requires: Python >=3.9
  • Provides-Extra: service , consul , owlready , cwl , docker , domains , k8s , galaxy , mmoda

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