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nbdctools

Python tooling for NIH NBDC Data Hub tabulated datasets, with two entry points:

  • create_dataset: R-backed wrapper around NBDCtools::create_dataset
  • create_dataset_py: pure-Python dataset assembly

Documentation

For full installation, workflow guides, API reference, troubleshooting, and benchmarks, use the documentation website:

Requirements

  • Python >=3.11

For the R-backed (create_dataset):

  • System R on PATH
  • R packages NBDCtools and NBDCtoolsData

Install

From PyPI:

pip install nbdctools

From source repo:

pip install "git+https://github.com/nbdc-datahub/nbdctools-py.git"

License

GNU General Public License v3.0 or later (GPL-3.0-or-later).

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