nbdctools 1.0.1

Python version of NBDCtools, a collection of tools for handling datasets in the NBDC DataHub.

nbdctools

Python tooling for NIH NBDC Data Hub tabulated datasets, with two entry points:

• create_dataset: R-backed wrapper around NBDCtools::create_dataset
• create_dataset_py: pure-Python dataset assembly

Documentation

For full installation, workflow guides, API reference, troubleshooting, and benchmarks, use the documentation website:

• Main site: https://software.nbdc-datahub.org/nbdctools-py/
• R package: https://software.nbdc-datahub.org/NBDCtools/

Requirements

• Python >=3.11

For the R-backed (create_dataset):

• System R on PATH
• R packages NBDCtools and NBDCtoolsData

Install

From PyPI:

pip install nbdctools

From source repo:

pip install "git+https://github.com/nbdc-datahub/nbdctools-py.git"

License

GNU General Public License v3.0 or later (GPL-3.0-or-later).