nbproject 0.0.4

nbproject: Manage your notebooks.

nbproject: Manage your notebooks

Start treating your Jupyter notebooks like gems, keep track of them and the data they load and write, share and collaborate at scale.

• Turn every notebook into a Notion database page.
• Treat every Jupyter notebook like you'd treat an ELN on Benchling.

Specification in comparison to other references

• Add metadata to notebooks first issue mentioned: https://github.com/jupyter/nbformat/issues/148
  • This triggered cell-level IDs, but left notebook-level IDs unresolved: https://nbformat.readthedocs.io/en/latest/format_description.html#cell-ids
• nbproject is client/distributed/embedded, and not on the server side:
  • https://github.com/nteract/commuter (see Netflix: https://netflixtechblog.com/notebook-innovation-591ee3221233)
  • https://github.com/notebook-sharing-space/nbss
• nbproject offers only the metadata management related project & data management, which JupyterBook doesn't. The focus of the https://github.com/executablebooks is publication.
  • Metadata within Jupyterbook is discussed here: https://jupyterbook.org/content/metadata.html
• Server-side notebook platforms have adopted providing IDs and other metadata to notebooks for a long time already

Notebook platforms

For instance, Google Colab has IDs just as any other notebook platform

  "metadata": {
    "colab": {
      "provenance": [
        {
          "file_id": "1Rgt3Q7hVgp4Dj8Q7ARp7G8lRC-0k8TgF",
          "timestamp": 1560453945720
        },
        {
          "file_id": "https://gist.github.com/blois/057009f08ff1b4d6b7142a511a04dad1#file-post_run_cell-ipynb",
          "timestamp": 1560453945720
        }
      ],

Other notebook platforms:

• Binder | https://mybinder.org/
• Saturn Cloud | https://saturncloud.io/
• Google Colab, Colab Pro, and within Google Cloud:
  • https://research.google.com/colaboratory/marketplace.html
  • https://colab.research.google.com/signup
  • https://cloud.google.com/automl-tables/docs/notebooks
    • https://github.com/GoogleCloudPlatform/ai-platform-samples/blob/main/notebooks/samples/tables/census_income_prediction/getting_started_notebook.ipynb
• AWS sagemaker | https://docs.aws.amazon.com/sagemaker/latest/dg/notebooks.html
• Gradient | https://gradient.run/notebooks
• Jupyter hub | https://jupyter.org/hub
• Deepnote | https://deepnote.com/
• Jovian | https://jovian.ai/docs/
• Bookstore | nteract/bookstore
• Commuter | nteract/commuter

Features

• Metadata display with a configurable schema as in Notion (have some fields be visible and others not?)
• ID generation and managemenet
• Notebook integrity & status
  • relevant for depositing data that comes from a "clean notebook"
    • distinguish "save deposit", all cells have been executed sequentially, no cell has been deleted from "rapid deposit" - which annotates with a warning - in which cells have been incompletely or multiple times executed
  • relevant for data provenance at loading time
    • tell user whether a notebook has already been instantiated, has been used to deposit data, if so, potentially show graph
    • tell user that no data was ever deposited with the notebook