nebgbhist
Tools for building annotation histories from multiple Genbank files.
Example
$ mkdir gbhist $ neb-rev-fetch -d gbhist NC_008512 $ neb-gbhist -d gbhist | neb-diff-apply NC_008512.git $ git –git-dir=NC_008512.git gc –aggressive $ neb-validate-history -p NC_008512.git -g gbhist/2009-04-29-04-04.gbk
Playing with files
If you clone the pack repository after building you can poke around at the contents on the file system. For larger genomes with lots of edits this may run afoul of directory entry limits until I rewrite the object storage. For the Carsonella (NC_008512) example I use there isn’t an issue.
$ git clone NC_008512.git $ cd NC_008512 $ ls -1 files
1 maintainer
Release files for nebgbhist 0.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| nebgbhist-0.0.1.tar.gz | 4.9 kB | Details |
Release files / nebgbhist-0.0.1.tar.gz
| Download URL | nebgbhist-0.0.1.tar.gz |
|---|---|
| Size | 4.9 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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