nedb-engine 0.5.5

NEDB — a versioned, self-compressing, time-traveling embedded database (replay-protected, idempotent, relational, searchable) with durable AOF persistence and a server daemon (nedbd).

NEDB

A versioned, self-compressing, time-traveling embedded database.

Replay-protected · idempotent · relational · filterable · sortable · searchable · provable. One Rust core → ships to PyPI and npm from a single source.

Website & docs → eth-interchained.github.io/nedb

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Why NEDB

Redis is fast because it's in-memory and simple — but relations are hand-rolled, history is gone the moment you overwrite, and every call pays a network hop. NEDB keeps the speed and adds the things real systems actually need:

• Faster-than-Redis latency where it's honest to claim it — NEDB runs embedded, in-process, so point reads pay no socket hop. The networked server (nedbd, RESP-compatible) competes on the Rust core's merits.
• Replay protection + idempotency in the core, not the app. Every write carries a strictly-monotonic per-client nonce and an optional idempotency key. Retries are no-ops; stale/out-of-order ops are rejected. This is built into one hash-chained, append-only log.
• Time-travel. Read the database exactly as it existed at any past sequence — AS OF seq. Debugging, audit, MVCC snapshots, and deterministic replay all fall out of the same log.
• Durable persistence, Redis-style. Point a database at a path and every op is appended to the hash-chained log on disk (and fsync'd); it reloads by replaying that log on open. It's exactly Redis's AOF model — except the append-only log is the same tamper-evident chain the engine already trusts, so verify() and AS OF hold across restarts and the log is never rewritten.
• First-class relations. Adjacency-list graph edges with O(1) traversal — and the graph time-travels too.
• Filter / sort / search. Equality, ordered, and full-text inverted indexes, maintained incrementally.
• git-style files with maximum compression. Content-defined chunking + content-addressed dedup + temperature tiers (fast warm codec, max-ratio cold archival). Every file version has a Merkle root you can anchor on-chain.

The keystone: one nonce-enforced append-only log is the substrate for idempotency, replay protection, crash recovery, MVCC, and time-travel — simultaneously.

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Quickstart (Python reference engine — runs today, zero build)

git clone https://github.com/Eth-Interchained/nedb && cd nedb
pip install -e .                 # pure-Python reference; no toolchain needed
python3 examples/demo.py         # see every feature
python3 tests/test_nedb.py       # 11/11 invariants

from nedb import NEDB

db = NEDB("./mydata")            # durable: append-only log on disk, reloads on open
# db = NEDB()                    # (no path = purely in-memory)
db.create_index("users", "status", "eq")
db.create_index("users", "age", "ordered")
db.create_index("users", "bio", "search")

db.put("users", "alice", {"name": "Alice", "age": 31, "status": "active",
                          "city": "Austin", "bio": "rust systems hacker"})

# Idempotent, replay-protected write (safe to retry forever):
db.put("orders", "o1", {"total": 42}, client="checkout", nonce=7, idem="charge-o1")

# NQL — filter + sort
db.query('FROM users WHERE age >= 25 AND status = "active" ORDER BY age DESC')

# Full-text search
db.query('FROM users SEARCH "rust"')

# Relations + graph traversal
db.link("users:alice", "follows", "users:bob")
db.q("users").where("_id", "=", "alice").traverse("follows").run()

# Time-travel
s = db.seq
db.put("users", "alice", {"name": "Alice", "city": "Lisbon", "age": 31, "status": "active"})
db.get("users", "alice", as_of=s)["city"]      # -> "Austin"

# git-style files with Cascade compression + provable history
v1 = db.put_file("notes.txt", open("notes.txt","rb").read())
db.file_root("notes.txt", v1)                  # Merkle root — anchorable on ITC

# Durable + provable across restarts
db.close()
db = NEDB("./mydata")                          # replays the log on open
assert db.verify()                             # the hash chain is intact
db.get("users", "alice", as_of=s)["city"]      # AS OF still works -> "Austin"

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Persistence

NEDB persists the way Redis does — by writing the operations, not by dumping pages — because the engine's whole thesis is that state is a pure function of the log.

• NEDB(path) opens a durable database in a directory. Every op is appended to log.aof (one JSON line) and fsync'd; index configuration is snapshotted to meta.json. On open, NEDB replays the log to rebuild state.
• NEDB() with no path is in-memory (unchanged).
• The append-only log is the same hash-chained, tamper-evident chain that powers idempotency, replay protection, and time-travel — so verify(), AS OF, relations, and the anchorable head all survive a restart. The log is never rewritten, so the chain (and its commitment) stays provable.

db = NEDB("./mydata")
db.put("users", "alice", {"name": "Alice", "status": "active"})
db.close()                       # flush + fsync

again = NEDB("./mydata")         # replays log.aof
assert again.verify()            # chain intact across the restart
again.get("users", "alice")      # -> {"name": "Alice", ...}

Snapshotting (an RDB-style fast-load checkpoint that keeps the AOF intact) and Rust-core parity are tracked on the roadmap.

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nedbd — run NEDB as a server

For client/server setups (multiple apps, a remote admin UI like NEDB Studio, or just keeping the database in its own process), pip install nedb-engine ships a daemon. It runs the engine as a long-lived process and serves an HTTP/JSON API; each named database is a durable NEDB(path) held open in memory. Connect to it the way you'd connect to Redis or Postgres — over a URL.

nedbd                       # http://127.0.0.1:7070, data in ./nedb-data
# config via env: NEDBD_HOST, NEDBD_PORT, NEDBD_DATA, NEDBD_TOKEN (optional bearer auth)

# create a database (optionally seeded with indexes / rows / links)
curl -X POST localhost:7070/v1/databases -d '{"name":"shop","init":{
  "indexes":[["users","status","eq"]],
  "seed":{"users":[{"id":"u1","name":"Ada","status":"active"}]}}}'

# query it (real NQL, real engine)
curl -X POST localhost:7070/v1/databases/shop/query -d '{"nql":"FROM users WHERE status = \"active\""}'

# write, verify, time-travel — all server-side on the durable log
curl -X POST localhost:7070/v1/databases/shop/put   -d '{"coll":"users","id":"u2","doc":{"name":"Bo"}}'
curl       localhost:7070/v1/databases/shop/verify

API: GET /health · GET|POST /v1/databases · GET|DELETE /v1/databases/<name> · POST …/query · POST …/put · POST …/index · POST …/link · DELETE …/rows/<coll>/<id> · GET …/verify · GET …/log. Databases persist across daemon restarts (the engine replays its append-only log on open).

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NQL — the NEDB Query Language

One small grammar; the Rust parser is the single source of truth so Python and Node share identical semantics. A fluent builder compiles to the same plan.

FROM <collection>
  [ AS OF <seq> ]
  [ WHERE <field> <op> <value> (AND ...)* ]      op ∈ = != < <= > >=
  [ SEARCH "<text>" ]
  [ ORDER BY <field> [ASC|DESC] ]
  [ TRAVERSE <relation> ]
  [ LIMIT <n> ]

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What's measured (v0.4.1 · pure Python · Linux x86_64)

Numbers from python3 bench/benchmarks.py — reproducible, not cherry-picked. Full results in bench/RESULTS.md.

Operation	Throughput	Latency
GET (embedded, in-process)	1.30M/s	0.77 µs
GET AS OF (time-travel)	997K/s	1.00 µs
PUT (logged, no index)	63.7K/s	15.7 µs
PUT durable (AOF + fsync)	7.0K/s	143 µs
QUERY: eq filter, eq index	1.42M/s	0.71 µs
QUERY: eq filter, no index (scan)	515K/s	1.94 µs
QUERY: SEARCH (inverted index)	467K/s	2.14 µs
SQL SELECT → NQL (adapter)	1.70M/s	0.59 µs
AutoIndexDB wrapper overhead	~0%	0.54 µs
File compression — warm	39.9×	—
File compression — cold (LZMA)	88.9×	—
Cross-version dedup	20 of 22 chunks	—

The reference engine proves the architecture. Run python3 bench/benchmarks.py --redis to compare against Redis TCP on your own machine. The Rust core (rust/) is the future speed target.

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Architecture

            ┌──────────────────────────────────────────────┐
  put/del → │  OpLog  (append-only · BLAKE3 hash chain ·    │ ← single source of truth
  link      │          per-client nonce · idempotency keys) │
            └───────────────┬──────────────────────────────┘
            deterministic fold │ (state = pure function of the log)
        ┌──────────────┬───────┴────────┬───────────────────┐
        ▼              ▼                ▼                   ▼
   MVCC store     Relations         Indexes            BlobStore (Cascade)
   (time-travel)  (graph, AS OF)    eq/ordered/search  CDC+dedup+tiers, Merkle roots

PyPI ships a universal pure-Python wheel (pip install nedb-engine works on every platform/Python, and includes the nedbd server) — the engine, persistence, and daemon are all pure Python. npm ships napi-rs native addons. Native PyO3 acceleration for PyPI is additive/roadmap (the public API is identical with or without it). A RESP-compatible nedbd wire protocol and a WASM build are also on the roadmap.

Full design: docs/SPEC.md.

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Repo layout

nedb/            pure-Python reference engine (this is what `pip install` ships today)
rust/            production core — nedb-core + nedb-py (PyO3) + nedb-node (napi-rs)
examples/demo.py end-to-end walkthrough
tests/           invariant tests
bench/           embedded micro-bench + Redis head-to-head harness
docs/SPEC.md     architecture specification
.github/         release CI → PyPI + npm on tag

Roadmap

• Reference engine: log, MVCC, relations, indexes, NQL, Cascade, Merkle
• Durable persistence: append-only log (AOF) on disk + replay-on-open; verify() / AS OF survive restarts
• RDB-style snapshot checkpoint (fast load) that keeps the AOF chain intact
• Rust core parity (persistence in nedb._native) + criterion benches + cargo test
• Universal pure-Python wheel + sdist on PyPI (installs everywhere; ships the nedbd command); napi-rs binaries on npm
• Additive native PyO3 acceleration wheels for PyPI (optional speed; same API)
• nedbd server: HTTP/JSON daemon — durable, multi-database; pip install ships the nedbd command
• nedbd: RESP-compatible wire protocol + native protocol
• Similarity-picked deltas + schema-aware columnar transforms
• On-chain (ITC) root anchoring; WASM build

NEDB Studio

The agentic, prompt-to-database GUI for NEDB — natural language → schema, NQL, seed data, and Python/Node snippets — lives in its own repo: Eth-Interchained/nedb-studio (Portal-powered, GPLv3).

License

Apache-2.0 · © INTERCHAINED, LLC — interchained.org. Built with AiAssist.