neg-detect 0.1.0

A BERT-based inference module for negation detection (cue, scope) -> planning to add focus and event in the near future

neg-detect

neg-detect is a Python package for detecting negation cues and their scopes in text using fine-tuned BERT models. It provides a pipeline to process batched text inputs, identify negation cues (e.g., "not", "n't"), and determine the scope of negation within sentences. The package leverages the Hugging Face Transformers library and PyTorch for efficient inference.

Features

• Negation Cue Detection: Identifies negation cues (e.g., "not", "n't") using the CueBertInference class.
• Negation Scope Detection: Determines the scope of negation in text using the ScopeBertInference class.
• Pipeline Processing: Combines cue and scope detection in a single pipeline for streamlined processing.
• Batch Processing: Supports batched inputs for efficient inference.
• GPU Support: Utilizes CUDA for accelerated inference on compatible hardware.
• TODO: In the future there will be negation event and focus detection components added to the Pipeline.

Installation

Prerequisites

• Python 3.6 or higher
• PyTorch
• Hugging Face Transformers
• CUDA-enabled GPU (optional, for faster inference)

Install via PyPI

pip install neg-detect

Install Dependencies

Ensure dependencies are installed:

pip install torch transformers

Usage

Basic Example

The following example demonstrates how to use the Pipeline class to detect negation cues and scopes in a batch of sentences.

from neg_detect import Pipeline

# Define input sentences
batch_tokens = [
    "Your sample input does n't go here .".split(" "),
    "This is not another test sentence .".split(" ")
]

# Initialize pipeline with default models
pipe = Pipeline()

# Run inference
results = pipe.run(batch_tokens)

# Pretty print results
Pipeline.pretty_print(results)

Output:

Your            X
sample          X
input           X
does            X
n't             C
go              S
here            S
,               X
i               X
live            X
in              X
Germany         X
.               X

This            X
is              X
not             C
another         S
test            S
sentence        S
.               X

Advanced Usage

For custom models or tokenizers, you can initialize the pipeline with specific components:

from neg_detect import Pipeline, CueBertInference, ScopeBertInference

# Load custom models and tokenizers
mcue_path = "Lelon/8449368577"
mscope_path = "Lelon/5556020097"
model_cue, tokenizer_cue = CueBertInference.load_model_and_tokenizer(mcue_path, mcue_path)
model_scope, tokenizer_scope = ScopeBertInference.load_model_and_tokenizer(mscope_path, mscope_path)

# Initialize pipeline with custom components
pipe = Pipeline(
    components=[CueBertInference, ScopeBertInference],
    models=[model_cue, model_scope],
    tokenizers=[tokenizer_cue, tokenizer_scope]
)

# Define input
batch_tokens = [
    "This is not another test sentence .".split(" ")
]

# Run inference
results = pipe.run(batch_tokens, device="cuda:0", max_length=128)

# Print results
Pipeline.pretty_print(results)

Package Structure

• CueBertInference: Detects negation cues (labeled as "C" for cues, "X" otherwise).
• ScopeBertInference: Identifies the scope of negation (labeled as "S" for scope, "X" otherwise).
• Pipeline: Combines CueBertInference and ScopeBertInference for end-to-end negation detection.
• Special Tokens:
  • [CUE]: Marks negation cues.
  • [SCO]: Marks negation scope.

Requirements

See requirements.txt for a full list of dependencies. Key dependencies include:

• torch>=1.9.0
• transformers>=4.9.0

License

This project is licensed under the MIT License - see the LICENSE file for details.

Contributing

Contributions are welcome! Please open an issue on the GitHub repository.