neuroboom
Neuroboom is a suite of Python 3 tools for analysing neuron reconstructions within Connectomic initiatives. This package is currently designed to operate on neuron recontructions within the CATMAID or Neuprint platforms.
These two different platforms reflect the two available connectomic efforts in the fruit fly, Drosophila melanogaster:
the Full Adult Female Brain (FAFB) Zheng et al., 2018, Cell
the Hemibrain, Scheffer et al., 2020, eLife
Have I seen this before?
Some code incorporated within the neuroboom package has been presented in scientific papers, most notably the dendrogram functions:
Integration of Parallel Opposing Memories Underlies Memory Extinction, J. Felsenberg et al., 2018, Cell
Input Connectivity Reveals Additional Heterogeneity of Dopaminergic Reinforcement in Drosophila, N. Otto, MW Pleijzier et al., 2018, Current Biology
Convergence of distinct subpopulations of mechanosensory neurons onto a neural circuit that elicits grooming, S. Hampel et al., 2020, biorXiv
Documentation
neuroboom is on readthedocs
Features
Dendrograms: 2D graph representations of neurons. * Available in static renderings for scientific papers / representations * Interactive renderings for exploratory analyses
Coming soon:
synaptic focalisation
electrotonic modelling
1 maintainer
Metadata
1 maintainer
Release files for neuroboom 0.3.55
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| neuroboom-0.3.55.tar.gz | 50.7 kB | Without provenance | Details for neuroboom-0.3.55.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| neuroboom-0.3.55-py3-none-any.whl | Python 3 | none | any | Details for neuroboom-0.3.55-py3-none-any.whl |
Total release size: 85.3 kB
Release files / neuroboom-0.3.55.tar.gz
| Download URL | neuroboom-0.3.55.tar.gz |
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| Size | 50.7 kB |
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Release files / neuroboom-0.3.55-py3-none-any.whl
| Download URL | neuroboom-0.3.55-py3-none-any.whl |
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| Size | 34.5 kB |
| Tags | Python 3 |
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