NeuroQP Python
NeuroQP Python lets neuroscientists open a NeuroQP project export, navigate its animals, slices, stainings, images, and registrations, and analyze classification or cell-match results with Python and NumPy.
Installation
Create and activate a virtual environment for your analysis:
python3.14 -m venv .venv
source .venv/bin/activate
python -m pip install neuroqp
See the installation guide for uv, Windows, JupyterLab, and update instructions.
Getting started
Validate or inspect an exported NeuroQP project:
neuroqp validate path/to/neuroqp_export.zip
neuroqp inspect path/to/neuroqp_export.zip
Open an export from Python:
from neuroqp import open_export
with open_export("neuroqp_export.zip") as export:
print(export)
animal = export.animal_by_name("Mouse 1")
for slice_ in animal.slices:
print(slice_.name, slice_.slice_coordinate_mm)
if export.classification is not None:
classification = export.classification.for_staining("NeuN")
results = classification.load_results()
print(results.positive_centroids)
ZIP archives and extracted export directories are both supported. Continue with the quickstart, analysis guide, or example notebooks.
Project links
- Documentation
- Using NeuroQP with AI coding agents
- AI-readable documentation
- Export v2 specification
- Versions
- Releases
- Changelog
- Questions and support
- Issue tracker
Supported versions
- Python 3.12 through 3.14
- NeuroQP project export format v2
Contributing
See CONTRIBUTING.md if you want to work on the package itself.
License
1 maintainer
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file neuroqp-0.1.0.tar.gz.
File metadata
- Download URL: neuroqp-0.1.0.tar.gz
- Upload date:
- Size: 390.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via:
twine/6.1.0 CPython/3.13.14
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
23d5f6881312f60bcd8f36ef430702b6b6bf2ec1187495d3fa482a7964a4247a
|
|
| MD5 |
8f48f93c99770d0858a8a98d399e290a
|
|
| BLAKE2b-256 |
2853c61cd4e354ddb3675aade3628da7379c5441c7d789d01953915ebc6dee45
|
Provenance
The following attestation bundles were made for neuroqp-0.1.0.tar.gz:
Publisher:
release.yml on neuroqp/neuroqp-python
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
neuroqp-0.1.0.tar.gz -
Subject digest:
23d5f6881312f60bcd8f36ef430702b6b6bf2ec1187495d3fa482a7964a4247a - Sigstore transparency entry: 2280958014
- Sigstore integration time:
-
Permalink:
neuroqp/neuroqp-python@dab2d685fb27c067a4e69180f041cb6b9501121a -
Branch / Tag:
refs/tags/v0.1.0 - Owner: https://github.com/neuroqp
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
release.yml@dab2d685fb27c067a4e69180f041cb6b9501121a -
Trigger Event:
push
-
Statement type:
File details
Details for the file neuroqp-0.1.0-py3-none-any.whl.
File metadata
- Download URL: neuroqp-0.1.0-py3-none-any.whl
- Upload date:
- Size: 48.8 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via:
twine/6.1.0 CPython/3.13.14
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
2706cb72326db40c3669b14df4b718086d97007a532d528961449a3da7c56b80
|
|
| MD5 |
0c9c5d9624f19d1b4e3fecbe9c2ace0b
|
|
| BLAKE2b-256 |
96c2a54bcc0d4fd830e25082eb45950fdc304e52004fff9e48a5824b7913336e
|
Provenance
The following attestation bundles were made for neuroqp-0.1.0-py3-none-any.whl:
Publisher:
release.yml on neuroqp/neuroqp-python
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
neuroqp-0.1.0-py3-none-any.whl -
Subject digest:
2706cb72326db40c3669b14df4b718086d97007a532d528961449a3da7c56b80 - Sigstore transparency entry: 2280958026
- Sigstore integration time:
-
Permalink:
neuroqp/neuroqp-python@dab2d685fb27c067a4e69180f041cb6b9501121a -
Branch / Tag:
refs/tags/v0.1.0 - Owner: https://github.com/neuroqp
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
release.yml@dab2d685fb27c067a4e69180f041cb6b9501121a -
Trigger Event:
push
-
Statement type:
