CNN based skull stripping (brain masking) from MRI
Project description
NeuroStrip
CNN based skull stripping (brain masking) from MRI.
Installation
For CPU support:
pip install neurostrip[cpu]
For GPU support:
pip install neurostrip[gpu]
Usage
neurostrip --image-path input.nii.gz --mask-path mask.nii.gz --masked-image-path output.nii.gz
Slicer Plugin
To make it more convenient to use, this repository includes a plugin that can be installed in 3D Slicer. For installation instructions and more details, please refer to the README.
Contributing
Contributions are welcome! See CONTRIBUTING.md for development setup and guidelines.
License
MIT License - see LICENSE file for details.
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