Skip to main content

Framework for data-driven generation of neuroglancer states.

Project description

Please find documentation here.

This package offers a set of tools designed to ease the programmatic generation of Neuroglancer states and close the loop between analysis and data exploration. The key tool is the notion of a StateBuilder that is easily configured to map dataframes into neuroglancer states. See the example notebook for what it can do an how it can simplify the process of making neuroglancer states, including setting annotations, segmentations, colors, tags, and more. It's also designed to operate easily with DashDataFrame to interactively explore complex data.

All code in the 'nglite' submodule is stripped down from v1.1.6 of the 'neuroglancer' python module from the fantastic Neuroglancer suite by Jeremy Maitin-Shepard from the Google connectomics team. Anything that works is their fault, anything that doesn't is ours. Please do not use this as a replacement for neuroglancer on pypi, which has more capabilities, albeit more sensitive installation procedures, than are needed for this work.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

nglui-3.6.1.tar.gz (57.8 kB view details)

Uploaded Source

Built Distribution

nglui-3.6.1-py3-none-any.whl (75.9 kB view details)

Uploaded Python 3

File details

Details for the file nglui-3.6.1.tar.gz.

File metadata

  • Download URL: nglui-3.6.1.tar.gz
  • Upload date:
  • Size: 57.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-httpx/0.27.2

File hashes

Hashes for nglui-3.6.1.tar.gz
Algorithm Hash digest
SHA256 398700deea2aa24942fe21b786105da4343dd3abc899b3e66b6fa921bfbc6f63
MD5 a31f5f7415f391c9620bab0e6b25a0ba
BLAKE2b-256 d927f020a55e97b3b4872d4c2f226b904a1a85f9e26eadce46fa5142aef6c222

See more details on using hashes here.

File details

Details for the file nglui-3.6.1-py3-none-any.whl.

File metadata

  • Download URL: nglui-3.6.1-py3-none-any.whl
  • Upload date:
  • Size: 75.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: python-httpx/0.27.2

File hashes

Hashes for nglui-3.6.1-py3-none-any.whl
Algorithm Hash digest
SHA256 70a56c5e55769969336a516d2ca4abb5799848cc8e4682fd6fa985bf40f91fd5
MD5 9c812678720ba43cbb3d7d9428d7b34f
BLAKE2b-256 4678c291b2231f2e93c3d64d4ebf091188e7fb36fcbb30e7f73a98328fae5920

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page