NGSidekick
Tools for working with neuroglancer. See docs.
Feature Highlights
-
Segment properties: read and write neuroglancer's precomputed segment properties format from a pandas DataFrame.
-
Local annotations: construct local annotations directly in viewer state. (API subject to change.)
-
Precomputed annotations: export annotations in neuroglancer's precomputed annotations format from a pandas DataFrame.
- Supports all five annotation types:
pointlineaxis_aligned_bounding_boxellipsoidpolyline
- Per-annotation properties (numeric, enum/categorical, and rgb/rgba color).
- Per-annotation relationships (lists of related segment IDs, used by neuroglancer to filter annotations by segment).
- Written to all "index" types (annotation id, related segment, and multi-level spatial grid)
- Sharded output, written in parallel via tensorstore.
- Note: writing directly to cloud storage is not yet supported; outputs must be written to a local filesystem (you must upload to cloud storage afterwards).
- Supports all five annotation types:
Installation
Packages are available from both PyPI and conda-forge.
Using pixi:
pixi add ngsidekick
Using conda:
conda install -c conda-forge ngsidekick
Using pip:
pip install ngsidekick
Using uv:
uv add ngsidekick
# or in an existing environment
uv pip install ngsidekick
1 maintainer
Metadata
1 maintainer
Release files for ngsidekick 0.0.20
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ngsidekick-0.0.20.tar.gz | 18.0 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ngsidekick-0.0.20-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 18.1 MB
Release files / ngsidekick-0.0.20.tar.gz
| Download URL | ngsidekick-0.0.20.tar.gz |
|---|---|
| Size | 18.0 MB |
| Tags | Source |
|
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Release files / ngsidekick-0.0.20-py3-none-any.whl
| Download URL | ngsidekick-0.0.20-py3-none-any.whl |
|---|---|
| Size | 97.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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