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A painless and customizable tool to generate heatmap with hiearchical clustering results and additional data bars.

Project description

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nheatmap

Inspired by pheatmap in R, this plotting tool aims to enable multi-level heatmap with the option to perform hierarchical clustering. The goal is to develop a python plotting package that is both intuitive in usage and extensive in plotting configuration.

Example

Requirements

  • python >= 3.5
  • matplotlib >= 3.0.3
  • scipy >= 1.3.1
  • numpy >= 1.17.2
  • pandas >= 0.25.1

Installation

  • Option 1 via pip:
pip install nheatmap
  • Option 2 via github:
git clone https://github.com/xuesoso/nheatmap

Include the cloned directory as part of the python path

Usage

To-do

  • [X] Documentation of the code
  • [ ] Cutting of heatmap
  • [ ] Bottom panel plots
  • [ ] Enable usage of AnnData structure
  • [ ] Highlight individual rows / columns

Other plotting tools

Project details


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Files for nheatmap, version 0.1.2
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Filename, size nheatmap-0.1.2-py3-none-any.whl (21.5 kB) File type Wheel Python version py3 Upload date Hashes View
Filename, size nheatmap-0.1.2.tar.gz (357.0 kB) File type Source Python version None Upload date Hashes View

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