Skip to main content


Project description


pipeline status coverage report downloads python versions pypi version

Create snapshots of segmentation maps produced by neuroimaging software.


From a Terminal:

nisnap c1.nii.gz c2.nii.gz c3.nii.gz --bg /tmp/test.nii.gz --opacity 30 -o /tmp/test.gif

From IPython/Jupyter Notebook:

import nisnap

Using XNAT

From a Terminal:

nisnap --config /home/grg/.xnat.cfg -e BBRC_E000

From IPython/Jupyter Notebook:

from nisnap import xnat
xnat.plot_segment(config='/home/grg/.xnat.cfg', experiment_id='BBRC_E000',
  raw=True, opacity=30, axes=('A'), cut_coords=range(100,120,2), animated=True)

How to install

pip install nisnap

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for nisnap, version 0.1b0
Filename, size File type Python version Upload date Hashes
Filename, size nisnap-0.1b0.tar.gz (6.6 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page