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nisnap

Project description

nisnap

pipeline status coverage report downloads python versions pypi version

Create snapshots of segmentation maps produced by neuroimaging software.

Usage

From a Terminal:

nisnap c1.nii.gz c2.nii.gz c3.nii.gz --bg /tmp/test.nii.gz --opacity 30 -o /tmp/test.gif

From IPython/Jupyter Notebook:

import nisnap
nisnap.plot_segment(

Using XNAT

From a Terminal:

nisnap --config /home/grg/.xnat.cfg -e BBRC_E000

From IPython/Jupyter Notebook:

from nisnap import xnat
xnat.plot_segment(config='/home/grg/.xnat.cfg', experiment_id='BBRC_E000',
  raw=True, opacity=30, axes=('A'), cut_coords=range(100,120,2), animated=True)

How to install

pip install nisnap

Project details


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Files for nisnap, version 0.1b0
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