FastSurfer is a fast and accurate deep-learning-based neuroimaging pipeline that provides a full FreeSurfer alternative for volumetric analysis (via FastSurferVINN) and surface-based thickness analysis (via recon-surf). It can segment a whole brain MRI scan in under one minute on a GPU and produces FreeSurfer-compatible outputs, making it a drop-in replacement for FreeSurfer's recon-all pipeline.
Project description
NiWrap wrappers for FastSurfer
FastSurfer is a fast and accurate deep-learning-based neuroimaging pipeline that provides a full FreeSurfer alternative for volumetric analysis (via FastSurferVINN) and surface-based thickness analysis (via recon-surf). It can segment a whole brain MRI scan in under one minute on a GPU and produces FreeSurfer-compatible outputs, making it a drop-in replacement for FreeSurfer's recon-all pipeline. FastSurfer includes FastSurferVINN for whole brain segmentation, CerebNet for cerebellum sub-segmentation, and HypVINN for hypothalamus sub-segmentation.
FastSurfer is made by Martin Reuter, Leonie Henschel, David Kuegler.
This package contains wrappers only and has no affiliation with the original authors.
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