nnmoduletools 0.0.17a0

A collection of neural network utilities

NNModuleTools

A collection of neural network utilities.

Contents

1. npz compare visualizer

   This tool can compare two npz archives visually.

2. float utils

   This tool can inspect the memory of float numbers. It also provides simple arithmetic operations between them.

3. module debugger

   This tool can save all the inputs and outputs of submodules in forward and backward pass. You can also manually save your desired tensors.

Installation

python -m pip install nnmoduletools

Usage

1. npz compare visualizer

   See tutorial.ipynb

   Now you can also use command line to compare two npz files and generate a report:

   python -m nnmoduletools.comparer [--tolerance 0.99,0.99] [--abs_tol 1e-8] [--rel-tol 1e-3] [--verbose 3] [--output_dir compare_report] [--output_fn compare_report.md] [--info] [--dump [10]] target.npz ref.npz [tensor1 tensor2 ...] 
   

   See python -m nnmoduletools.comparer --help for more information.

   The command line tool only support basic operations. You can also use Reporter in Python scripts to generate your own report:

   from nnmoduletools.comparer import Reporter
   with Reporter("path/to/output/dir", "report.md"):
       comparer = nnmoduletools.NPZComparer("path/to/target.npz", "path/to/ref.npz")
       print("# Compare Report: tensor")
       comparer.plot_vs_auto(tensor="tensor", save_fig=True, save_dir="subdir")
       comparer.dump_vs_plot(top_k=20)
   

   You will have your report in path/to/output/dir/report.md and the plots in path/to/output/dir/subdir/.

2. float utils

   See tutorial.ipynb

3. module debugger

   Typical usage: run the same module using two different devices, dump the tensors into npz file and compare them in npz compare visualizer.

   You may have to set environment variables:

   export DBG_DEVICE=cuda # suppose you are using cuda as the device; if you are using deepspeed, device name will be automatically get from deepspeed.get_accelerator()
   export DBG_SAVE_ALL=1 # by default no tensors are saved; you should export this to enable saving
   

   Insert these lines into your code:

   import torch
   from nnmoduletools.module_debugger import register_hook, save_tensors, save_model_params, save_model_grads, combine_npz
   
   class YourModule(torch.nn.Module):
       ...
       # Your module here
   
   model = YourModule()
   model.apply(register_hook) # <=== apply the hook to print log and save input output tensors
   ...
   save_model_params(0) # <=== save the model params before training
   # in your training loop
   for step in range(1, total_steps+1):
       output = model.forward(input)
       loss = loss_function(output, target)
       loss.backward()
       combine_npz(step) # <=== combine input and output tensors into large npzs
       save_model_grads(step) # <=== save the model grads after backward pass
       optimizer.step()
       save_model_params(step) # <=== save the model params after optim update
       save_tensors(tensor_to_save, name_to_save, dir_to_save, save_grad_instead) # <=== save the tensor you want to given directory. You can save grad instead by passing save_grad_instead=True
   

   The log and npz files will be saved in a directory named like logs_2024.06.04.16.52.12/

   You can get the latest log directory easily with LogReader:

   from nnmoduletools.module_debugger import LogReader
   latest = LogReader(devices=["cuda"])
   print(latest.cuda_dir)
   

Troubleshooting

You may encounter such errors when using backward hooks:

RuntimeError: Output 0 of BackwardHookFunctionBackward is a view and is being modified inplace. This view was created inside a custom Function (or because an input was returned as-is) and the autograd logic to handle view+inplace would override the custom backward associated with the custom Function, leading to incorrect gradients. This behavior is forbidden. You can fix this by cloning the output of the custom Function.

It is likely because that your module has an inplace operation right before return in forward, such as

class YourModule(torch.nn.Module):
    ...
    def forward(self, x):
        result = ...
        result += 1 # <===
        return result

You can replace the operation with

    def forward(self, x):
        result = ...
        result = result + 1 # <===
        return result