nr-oaipmh-harvesters 1.0.74

OAIPMH harvesters for National repository

NR OAI-PMH Harvesters

OAI-PMH metadata transformers for the Czech National Repository (Národní Repozitář). This package converts harvested MARC 21 records from external repositories into the NR metadata schema, enabling seamless ingestion into the Invenio-based national repository infrastructure.

Overview

nr-oaipmh-harvesters is a plugin for oarepo-oai-pmh-harvester that provides transformer implementations. Each transformer maps MARC 21 fields from a specific source repository to the NR documents metadata model (nr-metadata).

Currently supported sources:

Source	Transformer key	Description
NUSL (Národní úložiště šedé literatury)	nusl	National Repository of Grey Literature — theses, reports, conference papers, and more

Requirements

• Python ≥ 3.9
• A running Invenio instance with the NR stack
• Dependencies (installed automatically): oarepo-oai-pmh-harvester >= 4.0.0, dojson, Levenshtein, nr-metadata

Installation

pip install nr-oaipmh-harvesters

The package registers itself as an Invenio extension via entry points — no additional configuration is needed beyond the standard Invenio app setup.

Usage

Registering a harvester

Use the Invenio CLI to register a new OAI-PMH harvester. For NUSL:

invenio oarepo oai harvester add nusl \
    --name "NUSL harvester" \
    --url http://invenio.nusl.cz/oai2d/ \
    --set global \
    --prefix marcxml \
    --loader sickle \
    --transformer marcxml \
    --transformer nusl \
    --writer 'service{service=nr_documents}'

This sets up a harvester that:

1. Connects to the NUSL OAI-PMH endpoint.
2. Fetches records using the sickle loader.
3. Pipes them through the marcxml transformer (generic MARC XML → JSON), then the nusl transformer (NUSL-specific mapping to NR schema).
4. Writes the resulting records via the nr_documents service.

Running the harvest

# Harvest new/updated records (incremental, from last timestamp)
invenio oarepo oai harvester run nusl

# Re-harvest everything
invenio oarepo oai harvester run nusl --all-records

# Run on background via Celery
invenio oarepo oai harvester run nusl --on-background

# Harvest specific record(s)
invenio oarepo oai harvester run nusl --identifier oai:invenio.nusl.cz:12345

Architecture

Transformer pipeline

OAI-PMH endpoint
  │
  ▼
Loader (sickle)         ── fetches raw XML
  │
  ▼
Transformer: marcxml    ── XML → flat JSON  {marc_field_code: value}
  │
  ▼
Transformer: nusl       ── MARC JSON → NR metadata schema
  │
  ▼
Writer (service)        ── creates/updates Invenio records

NUSL transformer

The NUSLTransformer (extending OAIRuleTransformer) handles the following MARC 21 fields:

MARC field	Target metadata
001	System identifier (NUSL control number)
020 / 022	ISBN / ISSN
035	Original OAI record identifier
041	Language
046	Date issued / date modified
245 / 246	Title, translated title, alternate title, subtitle
260	Publisher
336	Certified methodology resource type
490	Series
502	Degree grantor, date defended
520	Abstract
540	Rights / license (Creative Commons parsing)
586	Defense status
598	Notes
650 / 653	Subjects and keywords (Czech / English)
656	Study field
710	Degree grantor (institutional)
711	Event (conference)
720	Creators and contributors (with ORCID, affiliation resolution)
773	Related item
856	Original record URL, external location, file attachments
970	Catalogue system number
980	Resource type
996	Accessibility
998	Collection
999	Funding references

The transformer also performs post-processing such as deduplication of languages, contributors, subjects, and additional titles.

Vocabulary resolution

The package includes a VocabularyCache that resolves free-text institution names (from MARC 720 affiliations) against the NR institutions vocabulary using Lucene queries and Levenshtein distance matching. Resolved institutions are cached via invenio-cache with a configurable TTL (default: 1 hour). A fallback temporary institutions lookup table (temp_institutions.py) is used for records that cannot be matched through the vocabulary service.

Project structure

nr-oaipmh-harvesters/
├── nr_oaipmh_harvesters/
│   ├── config.py                 # Registers transformers in DATASTREAMS_TRANSFORMERS
│   ├── ext.py                    # Invenio extension (NRDocsOAIHarvesterExt)
│   └── nusl/
│       ├── __init__.py           # Exports NUSLTransformer
│       ├── transformer.py        # NUSL MARC 21 → NR metadata transformer
│       └── temp_institutions.py  # Fallback institution name mapping
├── tests/
│   ├── run_transform.py          # End-to-end harvest test
│   ├── run_transform_separately.py  # Per-record transformer test with validation
│   ├── test_institutions.py      # Institution resolution tests
│   ├── get_code.py
│   └── invenio.cfg
├── format.sh                     # Code formatting (black, autoflake, isort)
├── setup.cfg
├── setup.py
├── pyproject.toml
└── README.md

Development

Setup

git clone [e-mail]:Narodni-repozitar/nr-oaipmh-harvesters.git
cd nr-oaipmh-harvesters
pip install -e ".[dev]"

Code formatting

./format.sh

This runs black (target Python 3.10), autoflake (unused import removal), and isort (import sorting, black profile).

Testing transformations locally

You can test the transformer against a local directory of OAI records:

# Requires a running Invenio app context and an oai-data directory
python tests/run_transform_separately.py

Errors are written to /tmp/errors.yaml for inspection.

Adding a new source repository

To add support for harvesting from a new OAI-PMH source:

1. Create a new sub-package under nr_oaipmh_harvesters/ (e.g., nr_oaipmh_harvesters/my_source/).
2. Implement a transformer class extending OAIRuleTransformer from oarepo-oaipmh-harvester.
3. Register the transformer in config.py by adding it to the DATASTREAMS_TRANSFORMERS dictionary.
4. Register the harvester via the Invenio CLI with --transformer my_source.

Related packages

• oarepo-oai-pmh-harvester — Core harvesting framework
• nr-metadata — NR metadata model (documents & data)
• nr-docs — NR document repository application

Authors

• Alžběta Pokorná ([e-mail])
• Miroslav Šimek ([e-mail])
• Juraj Trappl ([e-mail])