NucFlag misassembly identifier.
Project description
NucFlag
Generates nucleotide frequency plots and genome misassembly BED files. Fork of NucFreq.
Input
- BAM file of PacBio HiFi reads to an assembly.
- (Optional) BED file of regions.
Output
- BED file of misassemblies.
- Plot with coverage of 1st and 2nd most common bases and misassemblies flagged.
Documentation
Read the docs at the NucFlag wiki for more information.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
nucflag-0.3.4.tar.gz
(18.4 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
nucflag-0.3.4-py3-none-any.whl
(19.5 kB
view details)
File details
Details for the file nucflag-0.3.4.tar.gz.
File metadata
- Download URL: nucflag-0.3.4.tar.gz
- Upload date:
- Size: 18.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
474fb7b3b8ccc409a0c3c6ae3b21191d9be086052363cc99228328e524229723
|
|
| MD5 |
e266e0d4f07ce67fb25f450a882098ba
|
|
| BLAKE2b-256 |
f72aceadea42a1606ee4d0b462f387d398245f09ef74d34ee681410a3f7d315e
|
File details
Details for the file nucflag-0.3.4-py3-none-any.whl.
File metadata
- Download URL: nucflag-0.3.4-py3-none-any.whl
- Upload date:
- Size: 19.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0709556f231c93eff213d77b8eadf9c7d86c649e625bb3a7496a22844a5422d3
|
|
| MD5 |
9f655215e7d8fb36edc54142c39750d9
|
|
| BLAKE2b-256 |
1f1c672a4dc9c8aaff7b435ab362c8b134e3745a551d35bb447963fe3a35dc5f
|
