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Project description
numerax
Statistical and numerical computation functions for JAX, focusing on tools not available in the main JAX API.
Installation
pip install numerax
Features
Special Functions
Inverse functions for statistical distributions with differentiability support:
import jax.numpy as jnp
import numerax
# Inverse functions for statistical distributions
x = numerax.special.gammap_inverse(p, a) # Gamma quantiles
y = numerax.special.erfcinv(x) # Inverse complementary error function
# Chi-squared distribution (includes JAX functions + custom ppf)
x = numerax.stats.chi2.ppf(q, df, loc=0, scale=1)
Key features:
- Halley's method for fast convergence
- Custom JVP implementation for exact gradients
- Numerical stability with adaptive precision
- Full JAX transformation compatibility
Profile Likelihood
Efficient profile likelihood computation for statistical inference with nuisance parameters:
import jax.numpy as jnp
import numerax
# Example: Normal distribution with mean inference, variance profiling
def normal_llh(params, data):
mu, log_sigma = params
sigma = jnp.exp(log_sigma)
return jnp.sum(-0.5 * jnp.log(2 * jnp.pi) - log_sigma
- 0.5 * ((data - mu) / sigma) ** 2)
# Profile over log_sigma, infer mu
is_nuisance = [False, True] # mu=inference, log_sigma=nuisance
def get_initial_log_sigma(data):
return jnp.array([jnp.log(jnp.std(data))])
profile_llh = numerax.stats.make_profile_llh(
normal_llh, is_nuisance, get_initial_log_sigma
)
# Evaluate profile likelihood
data = jnp.array([1.2, 0.8, 1.5, 0.9, 1.1])
llh_val, opt_nuisance, diff, n_iter = profile_llh(jnp.array([1.0]), data)
Key features:
- JIT-compiled for performance
- L-BFGS optimization with convergence diagnostics
- Configurable tolerance and initial values
- Handles parameter masking automatically
Utilities
Development utilities for creating JAX functions with custom derivatives while ensuring proper documentation support. Includes decorators for preserving function metadata when using JAX's advanced features.
Requirements
- Python ≥ 3.12
- JAX
- jaxtyping
- optax
Acknowledgements
This work is supported by the Department of Energy AI4HEP program.
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