Automated error detection using Nextera Mate Pair data
Project description
NxRepair is an automated error detection tool for use with de novo assemblies from Nextera mate pair data.
We have a tutorial and API on ReadTheDocs
To get started, here’s how to use NxRepair (more details, caveats and options in the tutorial):
nxrepair aligned_matepairs.bam assemblyfasta.fasta error_locations.csv new_fasta.fasta
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