Skip to main content

Automated error detection using Nextera Mate Pair data

Project description

NxRepair is an automated error detection tool for use with de novo assemblies from Nextera mate pair data.

We have a tutorial and API on ReadTheDocs

To get started, here’s how to use NxRepair (more details, caveats and options in the tutorial):

nxrepair aligned_matepairs.bam assemblyfasta.fasta error_locations.csv new_fasta.fasta

Project details


Release history Release notifications

This version
History Node

0.13

History Node

0.12

History Node

0.11

History Node

0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
nxrepair-0.13.tar.gz (9.4 kB) Copy SHA256 hash SHA256 Source None Jan 8, 2015

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging CloudAMQP CloudAMQP RabbitMQ AWS AWS Cloud computing Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page