Automated error detection using Nextera Mate Pair data
NxRepair is an automated error detection tool for use with de novo assemblies from Nextera mate pair data.
To get started, here’s how to use NxRepair (more details, caveats and options in the tutorial):
nxrepair aligned_matepairs.bam assemblyfasta.fasta error_locations.csv new_fasta.fasta
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