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Automated error detection using Nextera Mate Pair data

Project description

NxRepair is an automated error detection tool for use with de novo assemblies from Nextera mate pair data.

We have a tutorial and API on ReadTheDocs

To get started, here’s how to use NxRepair (more details, caveats and options in the tutorial):

nxrepair aligned_matepairs.bam assemblyfasta.fasta error_locations.csv new_fasta.fasta

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