oak-understory-shared-biomedicine

An Understory commons: shared discipline assets, no seat.

A commons is machinery several faculties use — literature fetching, trial records, entity linking, scorers and fitters for the biomedical faculties. It holds no constitutional power, fills no post, and never appears in understory.toml.

⭐⭐ The one thing a commons may NEVER do

Hold a stoplist, or construct an Expertise.

A stoplist is the DOMAIN IDENTITY. Two faculties that inherit one from a shared package are, to the Scout, the same domain — so every "cross-domain" match between them is a topic match. Nothing goes red, no test fails, and the run answers a different question from the one that was asked. That is the failure this whole engine exists to refuse, and it would arrive here disguised as reuse.

Enforced two ways, deliberately: the commons_stoplist check across the tree, and this package's own suite walking every module from the inside — because a check that runs in one place is a check somebody can move a file out from under.

⚠️ Note the asymmetry with family. commons is a SHARED-MACHINERY relation; family is a TAXONOMIC one. Conflating them was a live bug — the console grouped by commons and filed engineering under Biomedicine.

Install

pip install oak-understory-shared-biomedicine

Part of the OakQuant oq-sync set. See understory/docs/repositories-and-packaging.md for where this package may live and what it may import.