oakx-oger
This is an OGER plugin for oaklib.
ALPHA
Usage
pip install oakx-oger
runoak -i oger:sqlite:obo:envo annotate cultured organisms polar ecosystems atmospheric gas exchange
How it works
There are two possible inputs to this plugin:
- A
.txtfile [runoak -i oger:sqlite:obo:envo annotate --text-file text.txt] - Words that need to be annotated.[
runoak -i oger:sqlite:obo:envo annotate cultured organisms polar ecosystems atmospheric gas exchange]
Input ontologies generally used oaklib can be used with an oger: prefix.
Note: This has been tested only with oger:sqlite:obo:* for now.
Acknowledgements
This cookiecutter project was developed from the oakx-plugin-cookiecutter template and will be kept up-to-date using cruft.
Release files for oakx-oger 0.1.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| oakx_oger-0.1.6.tar.gz | 9.4 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| oakx_oger-0.1.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 19.4 kB
Release files / oakx_oger-0.1.6.tar.gz
| Download URL | oakx_oger-0.1.6.tar.gz |
|---|---|
| Size | 9.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.9.18
|
Release files / oakx_oger-0.1.6-py3-none-any.whl
| Download URL | oakx_oger-0.1.6-py3-none-any.whl |
|---|---|
| Size | 10.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
23c3483d8126fc11b0d3d0a85f702e702878832b35eded2f882e75a92d73b88d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.9.18
|
Security for oakx-oger 0.1.6
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