obkit 0.0.3

Utility toolkit for omnibenchmark modules and Snakemake workflows

obkit

Utility toolkit for omnibenchmark modules and Snakemake workflows. Pure stdlib, zero runtime dependencies.

The R implementation lives in the same repository under r/obkit.

Install

pip install obkit

Modules

module	purpose
obkit.logger	Structured JSONL lifecycle event logging — drop phase-boundary anchors into a log file so downstream tooling can attribute profiler samples to named phases of a rule.
obkit.prof	Parse and align profiler output (denet, Snakemake bench files) with logger events for per-phase resource attribution. (in progress)

Usage

from obkit.logger import init_logger, emit

init_logger("/path/to/logdir")
emit("align", "start")
# ... do work ...
emit("align", "end", attrs={"reads": 12345})

Events are written to obkit-events.jsonl inside the directory passed to init_logger. See the wire format spec for the record schema.

Status

v0.1, pre-release. Wire format is stable; API may still shift.

License

MIT — see LICENSE.