obkit
Utility toolkit for omnibenchmark modules and Snakemake workflows. Pure stdlib, zero runtime dependencies.
The R implementation lives in the same repository under r/obkit.
Install
pip install obkit
Modules
| module | purpose |
|---|---|
obkit.logger |
Structured JSONL lifecycle event logging — drop phase-boundary anchors into a log file so downstream tooling can attribute profiler samples to named phases of a rule. |
obkit.prof |
Parse and align profiler output (denet, Snakemake bench files) with logger events for per-phase resource attribution. (in progress) |
Usage
from obkit.logger import init_logger, emit
init_logger("/path/to/logdir")
emit("align", "start")
# ... do work ...
emit("align", "end", attrs={"reads": 12345})
Events are written to obkit-events.jsonl inside the directory passed to
init_logger. See the wire format spec
for the record schema.
Status
v0.1, pre-release. Wire format is stable; API may still shift.
License
MIT — see LICENSE.
1 maintainer
Metadata
1 maintainer
Release files for obkit 0.0.3
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Source distribution (sdist)
| File | Size | Uploaded | |
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| obkit-0.0.3.tar.gz | 4.9 kB | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| obkit-0.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 9.7 kB
Release files / obkit-0.0.3.tar.gz
| Download URL | obkit-0.0.3.tar.gz |
|---|---|
| Size | 4.9 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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| Size | 4.8 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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