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Algorithms for diffraction tomography

Project description

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ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D.


The documentation, including the reference and examples, is available at


pip install odtbrain


After cloning into odtbrain, create a virtual environment

virtualenv --system-site-packages env
source env/bin/activate

Install all dependencies

pip install -e .

Running an example

python examples/

Running tests

python test

Project details

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