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Algorithms for diffraction tomography

Project description

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ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D.

Documentation

The documentation, including the reference and examples, is available at odtbrain.readthedocs.io.

Installation

pip install odtbrain

Testing

After cloning into odtbrain, create a virtual environment

virtualenv --system-site-packages env
source env/bin/activate

Install all dependencies

pip install -e .

Running an example

python examples/backprop_from_fdtd_2d.py

Running tests

python setup.py test

Project details


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