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Algorithms for diffraction tomography

Project description

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ODTbrain provides image reconstruction algorithms for Optical Diffraction Tomography with a Born and Rytov Approximation-based Inversion to compute the refractive index (n) in 2D and in 3D.


The documentation, including the reference and examples, is available at


pip install odtbrain


After cloning into odtbrain, create a virtual environment:

virtualenv --system-site-packages env
source env/bin/activate

Install ODTbrain in editable mode:

pip install -e .

Running an example:

python examples/

Running tests:

pip install pytest
pytest tests

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