50 projects
dcscope
User interface for deformability cytometry (DC)
dclab
Library for real-time deformability cytometry (RT-DC)
nrefocus
numerical focusing (refocusing, autofocusing) of complex wave fields
qpretrieve
library for phase retrieval from holograms
afmformats
reading common AFM file formats
dcoraid
GUI/CLI for managing data on DCOR
bmicro
GUI for Brillouin evaluation
bmlab
Library for Brillouin microscopy data analysis
pyjibe
Graphical user interface for Bio-AFM analysis
nanite
Loading, fitting, and rating AFM force-distance data
igor2
interface for reading binary IGOR files
ckanext-dc-serve
Serve DC on DCOR data via the CKAN API interface
dcnum
numerics toolbox for imaging deformability cytometry
pycorrfit
Scientific tool for fitting correlation curves on a logarithmic plot.
chipstream
GUI and CLI for DC data postprocessing
ckanext-dcor-depot
Manages data storage for DCOR
cytopix
GUI for pixel-based manual segmentation of DC images
fcswrite
Write .fcs files (flow cytometry)
ckanext-dcor-schemas
Introduces or lifts restrictions (authorization) for managing data and metadata on DCOR
dctag
GUI for ground truth generation from .rtdc files for machine-learning-based event classification in deformability cytometry
dcor-control
CLI for maintaining DCOR installations
ckanext-dcor-theme
The DCOR CKAN theme
ckanext-dc-view
Preview DC data on DCOR
radontea
collection of algorithms to compute the inverse Radon transform
dckit
Graphical toolkit for RT-DC data management
shapeout2
User interface for deformability cytometry (DC)
dcor-shared
Functionalities shared by the DCOR CKAN extensions
cellwell
User interface for deformability cytometry (DC)
ckanext-dc-log-view
View DC data logs on DCOR
ODTbrain
Algorithms for diffraction tomography
mpl-data-cast
convert and transfer data to network shares
qpformat
library for opening quantitative phase imaging data
flimage
library for manipulating fluorescence microscopy series data
qpimage
library for manipulating quantitative phase images
cskernel
Placeholder for internal package
multipletau
A multiple-tau algorithm for Python/NumPy
nanite-model-sneddon-spher
Sneddon model for AFM analysis in nanite
impose
Fit and superimpose shapes from different imaging modalities
hpc-pipeline-code
Blocker for internal Python package
drymass
manipulation and analysis of phase microscopy data
dcevent
Placeholder package for internal development
qpsphere
library for analyzing spherical objects in phase imaging
fluigent-sdk
Placeholder for fluigent_sdk by Fluigent
cytoshot
cellsino
in-silico sinograms (phase and fluorescence) of cells
cellreel
graphical user interface for refractive index and " + fluorescence tomography
shapelink
Inter-process communication with Shape-In
pyscanfcs
Scientific tool for perpendicular line scanning FCS.
shapeout
User interface for real-time deformability cytometry (RT-DC)
ggf
global geometric factors and corresponding stresses of the optical stretcher
