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User interface for real-time deformability cytometry (RT-DC)

Project description

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Shape-Out 2 is the successor of Shape-Out, a graphical user interface for the analysis and visualization of RT-DC data sets. For more information please visit https://zellmechanik.com/.

Documentation

The documentation, including the code reference and examples, is available at shapeout2.readthedocs.io.

Installation

Installers for Windows and macOS are available at the release page.

If you have Python 3 installed, you can install Shape-Out 2 with

pip install shapeout2

Citing Shape-Out

Please cite Shape-Out either in-line

(...) using the analysis software Shape-Out version 2.X.X (available at
https://github.com/ZELLMECHANIK-DRESDEN/ShapeOut2).

or in a bibliography

Paul Müller and others (2019), Shape-Out version 2.X.X: Analysis software
for real-time deformability cytometry [Software]. Available at
https://github.com/ZELLMECHANIK-DRESDEN/ShapeOut2.

and replace 2.X.X with the version of Shape-Out that you used.

Testing

pip install -e .
pip install -r tests/requirements.txt
pytest tests

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