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User interface for real-time deformability cytometry (RT-DC)

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Shape-Out 2 is the successor of Shape-Out, a graphical user interface for the analysis and visualization of RT-DC data sets. For more information please visit


The documentation, including the code reference and examples, is available at


Installers for Windows and macOS are available at the release page.

If you have Python 3 installed, you can install Shape-Out 2 with

pip install shapeout2

Citing Shape-Out

Please cite Shape-Out either in-line

(...) using the analysis software Shape-Out version 2.X.X (available at

or in a bibliography

Paul Müller and others (2019), Shape-Out version 2.X.X: Analysis software
for real-time deformability cytometry [Software]. Available at

and replace 2.X.X with the version of Shape-Out that you used.


pip install -e .
pip install -r tests/requirements.txt
pytest tests

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