Python tools to convert and preprocess OpenEphys data to the DAQ-HDF5 (dh5) format
Project description
oecon — Open Ephys Converter
Converts Open Ephys GUI recordings into DAQ-HDF5 (DH5) format.
Conversion steps: LFP decimation, MUA/ESA envelope, TTL events, VStim network events, trial map, raw data copy.
Installation
Requires uv.
uv tool install oecon
or for the latest development version:
uv tool install git+https://github.com/brain-bremen/oecon.git
Update
uv tool upgrade oecon
GUI
oecon-gui # converter
oecon-inspect # session browser
Configs save session paths, output folder, and all step parameters — enough to reproduce a run.
CLI
oecon <session_path> [<session_path> ...]
oecon <session_path> --config config.json --output-folder /out
oecon <session_path> --inspect
Library
from oecon import convert_open_ephys_session
convert_open_ephys_session("/path/to/session")
Default CONT block ranges
| Range | Purpose |
|---|---|
| 1 – 2000 | Raw neural/analog data |
| 2001 – 3600 | LFP |
| 3601 – 4000 | Downsampled analog |
| 4001 – 5600 | MUA/ESA |
| 6001 – 7600 | High-pass filtered raw (reserved) |
Sorted spikes: SPIKE 1–1000.
Release history Release notifications | RSS feed
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