ogn-sdk 0.9.1

Thin helpers for launching local OGN runs and calling the OGN control plane

ogn-sdk (Python)

ogn-sdk is a tiny convenience layer around the ogn_run binary. Install it with:

python3 -m pip install ogn-sdk

Example usage:

from ogn_sdk import RunRequest, run_local

req = RunRequest(
    fastq="/data/sample_R1.fastq.gz",
    reference="/data/ref.fa",
    output_vcf="out/sample.g.vcf.gz",
    sample_id="hg002_chr20",
    profile_dir="profile_hg002"
)

result = run_local(req)
print("exit status", result.returncode)

RunRequest maps directly to CLI flags, so you can pass fastq2, bundle, or any additional CLI switches via extra_args. The helper simply shells out to ogn_run (defaulting to the binary on PATH).