olira 1.5.0

Olira Python SDK — event ingestion client for the Olira platform

Olira Python SDK

Log ingestion, patient management, cohort management, historical backfill, and patient state client for the Olira platform.

Install

pip install olira

Documentation

Full API reference: https://docs.olira.ai/reference/sdk.

Local copy: SDK_DOCUMENTATION.md.

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Authentication

All SDK methods authenticate with an Olira API key (olira_prod_...). Create keys from the Olira Console under Settings → API Keys, selecting the scopes you need:

Scope	What it unlocks
sdk:event-log	Log events
api:manage-patients	Create, read, update, delete patients and cohorts
sdk:patient-token	Mint short-lived patient-scoped JWTs
sdk:historical-ingest	Create and manage historical data ingestion jobs
sdk:state-read	Read Patient State (modules, views, logs, memories)
mcp:patient-state	Query Patient State via the MCP Patient State server

See API key scopes for the full list.

Pass the key to OliraClient or to olira.init():

import olira
olira.init(api_key="olira_prod_...")  # or set OLIRA_API_KEY env var

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Patient Management

Patients must exist before you can log events against them. Use the api:manage-patients scope.

Olira assigns a stable id to each patient at creation time. The id returned in the Patient object is what you use in all subsequent calls.

from olira import OliraClient

client = OliraClient(api_key="olira_prod_...")

# Create — Olira assigns the id; store it for future calls
patient = client.create_patient(
    first_name="Jane",
    last_name="Smith",
    timezone="America/New_York",
    primary_disease_site="breast",
    disease_stage="II",
)
patient_id = patient.id

# Get
patient = client.get_patient(patient_id=patient_id)

# List (paginated, returns PatientListResult)
result = client.list_patients(limit=50, offset=0)
for p in result.patients:
    print(p.id, p.first_name, p.last_name)

# Update (only supplied fields are changed)
patient = client.update_patient(patient_id=patient_id, disease_stage="III")

# Soft-delete
client.delete_patient(patient_id=patient_id)

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Cohort Management

Group patients into named cohorts and assign summary templates to them. Requires the api:manage-patients scope.

from olira import OliraClient

client = OliraClient(api_key="olira_prod_...")

# Create a cohort
cohort = client.create_cohort(name="High-Risk Patients", description="Weekly review")
cohort_id = cohort.id

# Enrol patients (up to 500 per call, idempotent)
client.add_patients_to_cohort(cohort_id=cohort_id, patient_ids=[patient_id])

# Assign a summary type — patients in the cohort get this template
client.assign_cohort_template(cohort_id=cohort_id, summary_type="symptom_overview")

# List, get, update
result = client.list_cohorts()
cohort = client.get_cohort(cohort_id=cohort_id)
client.update_cohort(cohort_id=cohort_id, description="Updated description")

# Remove patients / unassign template
client.remove_patients_from_cohort(cohort_id=cohort_id, patient_ids=[patient_id])
client.unassign_cohort_template(cohort_id=cohort_id, summary_type="symptom_overview")

# Delete (cascades template assignments; patient records are unaffected)
client.delete_cohort(cohort_id=cohort_id)
client.close()

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Logging

Log a single event in the background (fire-and-forget):

import olira
from olira import OliraLogType

olira.init(api_key="olira_prod_...")

olira.log(
    log_type=OliraLogType.USER_LOGIN,
    patient_id=patient_id,  # id from patient.id
)
olira.flush()  # block until delivery

Send a batch directly and get back a result:

from olira import OliraClient, LogSpec, OliraLogType

client = OliraClient(api_key="olira_prod_...")
result = client.log_batch([
    LogSpec(log_type=OliraLogType.USER_LOGIN, patient_id=patient_id),
    LogSpec(
        log_type=OliraLogType.SYMPTOM_REPORT,
        patient_id=patient_id,
        payload={
            "instrument": "esas_r",
            "symptoms": [{"name": "pain", "score": 4}],
        },
    ),
])
print(f"accepted={result.accepted}, failed={result.failed}")
client.close()

If your source data is already in FHIR R4 format, use log_fhir() — Olira maps the resource to the right log type automatically using the same absorber as Epic/Cerner integrations:

from olira import OliraClient, ValidationError

client = OliraClient(api_key="olira_prod_...")
try:
    result = client.log_fhir(
        patient_id=patient_id,
        resource={
            "resourceType": "Condition",
            "clinicalStatus": {"coding": [{"code": "active"}]},
            "code": {"text": "Breast cancer"},
            "subject": {"reference": f"Patient/{patient_id}"},
            "onsetDateTime": "2025-01-10T00:00:00Z",
        },
    )
    print(f"accepted={result.accepted}")
except ValidationError as e:
    print(f"Resource not mappable: {e}")
client.close()

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Historical Ingestion

Backfill months or years of existing patient data. Requires the sdk:historical-ingest scope.

import olira, time

# Submit a JSONL file — the SDK uploads it to S3 and creates the job
job = olira.create_ingestion_job(
    file="patients_and_logs.jsonl",
    idempotency_key="initial-onboarding-2026",
    require_confirmation=True,  # pause to review before replay
)

# Poll until awaiting confirmation (or complete)
while job.status not in ("completed", "failed", "awaiting_confirmation"):
    time.sleep(5)
    job = olira.get_ingestion_job(job_id=job.job_id)
    print(f"{job.stage}  {job.progress_pct:.1f}%")

# Review, then confirm to trigger graph replay and view backfill
print(f"Patients: {job.patients_processed}  Logs: {job.logs_processed}")
olira.confirm_ingestion_job(job_id=job.job_id)

See the Backfilling historical data guide for the full walkthrough including inline payloads, validation, cancellation, and error recovery.

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Patient Token

Mint a short-lived JWT scoped to a single patient. Requires the sdk:patient-token scope.

Use this when a patient device needs to communicate with the Olira MCP Patient State server — pass the token as a Bearer header. The token expires after 15 minutes and is locked to the specified patient.

from olira import OliraClient

client = OliraClient(api_key="olira_prod_...")
token = client.get_patient_token(patient_id=patient_id)

print(token.access_token)  # forward this to the patient device
print(token.expires_in)    # 900 (seconds)
client.close()

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Patient State

Read structured Patient State (modules, views, logs, and memories). Requires the sdk:state-read scope.

from olira import OliraClient

client = OliraClient(api_key="olira_prod_...")

# Stable profile data (demographics, medications, care team, etc.)
stable = client.get_stable_data(patient_id=patient_id)

# Event-driven module (symptoms, labs, vitals, etc.)
module = client.get_event_state_module(patient_id=patient_id, module_type="symptoms")

# Generated view (template-driven summary your agents consume)
view = client.get_view(patient_id=patient_id, view_type="weekly_health_summary")

# Memories
memories = client.read_memories(patient_id=patient_id)

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Async client

All methods are available on AsyncOliraClient as coroutines:

import asyncio
from olira import AsyncOliraClient, OliraLogType

async def main():
    async with AsyncOliraClient(api_key="olira_prod_...") as client:
        patient = await client.create_patient(
            first_name="Jane",
            last_name="Smith",
        )
        await client.log(
            log_type=OliraLogType.USER_LOGIN,
            patient_id=patient.id,
        )

asyncio.run(main())

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Error handling

from olira import AuthError, ValidationError, RateLimitError, ServerError

try:
    client.log_batch([...])
except AuthError:
    # Invalid or revoked API key, or missing scope
    ...
except ValidationError:
    # Bad request (400/404/422) — e.g. unknown event type or missing required field
    ...
except RateLimitError as e:
    # Retry after e.retry_after seconds
    ...
except ServerError:
    # Transient server error after all retries exhausted
    ...

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Examples

Runnable scripts under examples/:

File	What it covers
00_quickstart.py	olira.init(), create a patient, log an event
01_patient_management.py	Create, get, list, update, delete patients
02_event_logging.py	log(), log_batch(), traces, flush
03_fhir_ingestion.py	log_fhir() with Condition, MedicationRequest, Appointment; error handling
04_historical_ingestion.py	File upload, polling, confirm/cancel flow
05_logs_only_workflow.py	Historical ingestion with log-only records when patients already exist in the org
06_read_patient_state.py	Stable data, event modules, views, logs, memories
07_patient_token.py	Mint token, MCP Bearer forwarding, PatientSession refresh helper
08_cohort_management.py	Create cohorts, enrol patients, assign templates, full lifecycle

06_read_patient_state.py and 07_patient_token.py require a patient with existing data — run 00_quickstart.py or 02_event_logging.py first and use the printed patient id. See examples/README.md for setup instructions (cp .env.example .env, uv sync).

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Contributing

Dependencies are public PyPI packages only:

bash scripts/install-dev.sh
./scripts/pre-pr.sh