ome-zarr-converters-tools

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A Python library that provides shared utilities for building OME-Zarr image converters. It handles tile management, image registration, filtering, validation, and writing OME-Zarr datasets.

Features

  1. Abstraction layer for building OME-Zarr images and HCS plates from microscope metadata and image data
  2. Customizable pipeline for filtering, validating, registering, and tiling images
  3. Python API for building custom converters, with optional Fractal integration for parallel processing
  4. Flexible input: parse tiles from DataFrames or construct them programmatically

Architecture Diagram

OME-Zarr Converters Tools Architecture

Getting Started

Install via pip:

pip install ome-zarr-converters-tools

Documentation

For detailed documentation, tutorials, and API reference, visit the official documentation.

The documentation includes:

Project links

Data verified by PyPI on Jul 3, 2026
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Key dates

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  • Released:
Newer release available (1.0.2)

1 maintainer

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Avatar for lorenzo.cerrone from gravatar.com lorenzo.cerrone

Credits

Author: Lorenzo Cerrone

GitHub Statistics

Data verified by PyPI on Jul 3, 2026
The GitHub source repository was provided by the project maintainers and verified by PyPI at the time of upload. Stars, forks, and open issues/PRs are derived from that repository and have not been independently verified.

License

BSD License (BSD-3-Clause)

Requires

Python <3.15, >=3.11

Provides Extra

dev docs test zarrs

Classifiers

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